RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1195551" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1195551 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5425744 5425744 PRJNA1195551_S_NODE_25765_length_199_cov_1.733333_g25412_i0 PRJNA1195551 25765 199 1.733333 3.44933267 Paravannella minima 1443144 Discosea other_Eukaryota 119 1.68e-22   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g25412 i0 79.429 5.25628140703518 175 30 86 5 10 181 2858 2687 Paravannella minima mitochondrion, complete genome blastn 1046 119 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
15625365 15625365 PRJNA1195551_S_NODE_28753_length_189_cov_1.485714_g28400_i0 PRJNA1195551 28753 189 1.485714 2.80799946 Acytostelium subglobosum 361139 Evosea other_Eukaryota 73.1 1.24e-8   NTclustered gi|831765209|ref|XM_012895960.1| 1410327 g28400 i0 85.507 1.06878306878307 69 10 37 0 12 80 1081 1149 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 202 73.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16899715 16899715 PRJNA1195551_S_NODE_41634_length_159_cov_61.918182_g41281_i0 PRJNA1195551 41634 159 61.918182 98.44990938 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.013   NTclustered gi|268637737|ref|XM_002649077.1| 352472 g41281 i0 100 0.176100628930818 28 0 18 0 29 56 700 727 Dictyostelium discoideum AX4 UbiA prenyltransferase family protein (DDB_G0295777) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
21999372 21999372 PRJNA1195551_S_NODE_41538_length_160_cov_2.810811_g41185_i0 PRJNA1195551 41538 160 2.810811 4.4972976 Parakanabo toge 3014015 Evosea other_Eukaryota 296 5.55e-76   NTclustered gi|2413992650|gb|OQ054990.1| 3014015 g41185 i0 100 100.61875 160 0 100 0 1 160 428 587 Parakanabo toge isolate HarnW1815 small subunit ribosomal RNA gene, complete sequence; and internal transcribed spacer 1, partial sequence blastn 16099 296 1 Eukaryota Amoebozoa   Evosea Variosea Profiliida   Parakanabo Parakanabo toge

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;