RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1195374 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9250111 9250111 PRJNA1195374_P_NODE_73028_length_250_cov_0.870056_g72684_i0 PRJNA1195374 73028 250 0.870056 2.17514 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 60.2 1.35e-4   NTclustered gi|2794889849|ref|XM_067922471.1| 135588 g72684 i0 100 0.128 32 0 13 0 132 163 2347 2378 Histomonas meleagridis uncharacterized protein (GO595_008851), partial mRNA blastn 32 60.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
10525242 10525242 PRJNA1195374_P_NODE_37169_length_368_cov_1.461017_g36825_i0 PRJNA1195374 37169 368 1.461017 5.37654256 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 117 1.22e-21   NTclustered gi|2319583589|ref|XM_001579516.2| 412133 g36825 i0 79.006 14.6766304347826 181 31 48 6 192 368 365 188 Trichomonas vaginalis G3 histone H2A (TVAGG3_1012540), partial mRNA blastn 5401 117 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;