RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1195374 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4148337 4148337 PRJNA1195374_P_NODE_32104_length_398_cov_16.920000_g31760_i0 PRJNA1195374 32104 398 16.92 67.3416 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 612 1.39e-170   NTclustered gi|238617605|gb|FJ973380.1| 45107 g31760 i0 94.486 98.4824120603015 399 19 99 3 2 398 2572 2175 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 39196 612 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
4148986 4148986 PRJNA1195374_P_NODE_65444_length_265_cov_1.500000_g65100_i0 PRJNA1195374 65444 265 1.5 3.975 Thaumatomonas sp. TMT002 407209 SAR_Eukaryotes SAR_Eukaryotes 285 2.19e-72   NTclustered gi|193875699|gb|EU812202.1| 407209 g65100 i0 86.09 77.1094339622641 266 35 100 2 1 265 68 332 Thaumatomonas sp. TMT002 clone tshsp70-1 70 kDa heat shock protein mRNA, partial cds blastn 20434 285 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas sp. TMT002
10524918 10524918 PRJNA1195374_P_NODE_22529_length_478_cov_4.602469_g22185_i0 PRJNA1195374 22529 478 4.602469 21.99980182 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 326 2.4799999999999997e-84   NTclustered gi|301014702|gb|GQ377715.1| 323453 g22185 i0 87.9 56.7468619246862 281 29 58 5 1 278 213 491 Heteromita sp. PRA-74 ribosomal protein S23a (rps23a) mRNA, complete cds blastn 27125 326 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
11799513 11799513 PRJNA1195374_P_NODE_10330_length_689_cov_2.917208_g10011_i0 PRJNA1195374 10330 689 2.917208 20.09956312 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 686 0   NTclustered gi|302026154|gb|GQ377660.1| 188950 g10011 i0 99.469 68.8476052249637 377 2 55 0 313 689 893 517 Bodomorpha minima beta-tubulin (Btub) gene, partial cds blastn 47436 686 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
11799664 11799664 PRJNA1195374_P_NODE_17110_length_547_cov_4.837553_g16768_i0 PRJNA1195374 17110 547 4.837553 26.46141491 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 455 3.5100000000000005e-123   NTclustered gi|300676716|gb|GQ377714.1| 323453 g16768 i0 86.538 61.819012797075 416 52 76 3 16 431 43 454 Heteromita sp. PRA-74 rps22a (rps22a) mRNA, complete cds blastn 33815 455 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
16899355 16899355 PRJNA1195374_P_NODE_74674_length_248_cov_2.200000_g74330_i0 PRJNA1195374 74674 248 2.2 5.456 Proleptomonas faecicola 149084 SAR_Eukaryotes SAR_Eukaryotes 261 3.42e-65   NTclustered gi|300676734|gb|GQ377664.1| 149084 g74330 i0 86.498 88.4637096774194 237 32 96 0 1 237 794 1030 Proleptomonas faecicola alpha-tubulin (Atub) gene, partial cds blastn 21939 261 1 Eukaryota Sar   Cercozoa   Glissomonadida   Proleptomonas Proleptomonas faecicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;