RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1195374 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11245834 11245834 PRJNA1195374_P_NODE_18089_length_533_cov_1.084783_g17746_i0 PRJNA1195374 18089 533 1.084783 5.78189339 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 878 0   NTclustered gi|2800948966|gb|CP168973.1| 959 g17746 i0 96.435 193.367729831144 533 18 100 1 1 533 1676951 1677482 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 103065 883 0.994337485843715 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16345038 16345038 PRJNA1195374_P_NODE_12413_length_635_cov_2.425267_g12078_i0 PRJNA1195374 12413 635 2.425267 15.40044545 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 977 0   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g12078 i0 94.366 174.862992125984 639 32 100 3 1 635 666362 667000 Bdellovibrio sp. qaytius chromosome, complete genome blastn 111038 977 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
22719644 22719644 PRJNA1195374_P_NODE_53718_length_297_cov_2.504464_g53374_i0 PRJNA1195374 53718 297 2.504464 7.43825808 Bdellovibrio 958 Bacteria Bacteria 176 1.57e-39   NTclustered gi|2800924434|gb|CP168967.1| 959 g53374 i0 82.326 2.17171717171717 215 27 72 10 78 290 1022150 1022355 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 645 176 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
24547783 24547783 PRJNA1195374_P_NODE_44760_length_331_cov_1.635659_g44416_i0 PRJNA1195374 44760 331 1.635659 5.41403129 Peredibacter starrii 28202 Bacteria Bacteria 525 1.53e-144   NTclustered gi|2631252187|gb|CP139487.1| 28202 g44416 i0 95.441 59.4803625377643 329 15 99 0 3 331 512054 512382 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 19688 525 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;