RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1195374 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9249117 9249117 PRJNA1195374_P_NODE_22408_length_480_cov_1.211302_g22064_i0 PRJNA1195374 22408 480 1.211302 5.8142496 Occallatibacter riparius 1002689 Bacteria Bacteria 65.8 6e-6   NTclustered gi|2304899767|gb|CP093313.1| 1002689 g22064 i0 87.719 0.11875 57 6 12 1 75 130 2820371 2820427 Occallatibacter riparius strain DSM 25168 chromosome, complete genome blastn 57 65.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Occallatibacter Occallatibacter riparius
19447640 19447640 PRJNA1195374_P_NODE_42776_length_340_cov_1.389513_g42432_i0 PRJNA1195374 42776 340 1.389513 4.7243442 Bryobacterales bacterium 2026791 Bacteria Bacteria 56.5 0.002   NTclustered gi|2874254061|emb|OY970385.1| 2026791 g42432 i0 100 0.170588235294118 30 0 9 0 14 43 5450317 5450346 MAG: Bryobacterales bacterium isolate MFD03726.bin.c.1 genome assembly, chromosome: 1 blastn 58 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
20722640 20722640 PRJNA1195374_P_NODE_24937_length_454_cov_3.375328_g24593_i0 PRJNA1195374 24937 454 3.375328 15.32398912 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 52.8 0.044   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g24593 i0 100 0.0616740088105727 28 0 6 0 36 63 4407065 4407092 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;