RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 6 ✖

bioproject 1

  • PRJNA1195374 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2872707 2872707 PRJNA1195374_P_NODE_56023_length_290_cov_1.267281_g55679_i0 PRJNA1195374 56023 290 1.267281 3.6751149 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 86.1 2.65e-12   NTclustered gi|551603367|ref|XM_005783135.1| 280463 g55679 i0 76.786 2.72068965517241 168 30 56 8 129 290 1944 1780 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 789 86.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
4148025 4148025 PRJNA1195374_P_NODE_1744_length_1345_cov_4.534591_g1591_i0 PRJNA1195374 1744 1345 4.534591 60.99024895 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 564 1.43e-155   NTclustered gi|551599845|ref|XM_005781656.1| 280463 g1591 i0 77.081 58.023791821561304 1021 206 75 17 60 1066 56 1062 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 78042 564 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
10525063 10525063 PRJNA1195374_P_NODE_28849_length_422_cov_1.524355_g28505_i0 PRJNA1195374 28849 422 1.524355 6.4327781 Chrysotila haptonemofera 35135 Haptophyta other_Eukaryota 135 3.92e-27   NTclustered gi|115292366|dbj|AB258475.1| 35135 g28505 i0 78.222 0.744075829383886 225 39 52 9 2 221 876 1095 Pleurochrysis haptonemofera cDNA, clone: SigC12 blastn 314 135 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Chrysotila Chrysotila haptonemofera
16898280 16898280 PRJNA1195374_P_NODE_20434_length_502_cov_1.198135_g20091_i0 PRJNA1195374 20434 502 1.198135 6.0146377 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 220 1.2699999999999999e-52   NTclustered gi|551560604|ref|XM_005767144.1| 280463 g20091 i0 84.188 1.97211155378486 234 30 46 7 54 286 1083 1310 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 990 220 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21444415 21444415 PRJNA1195374_P_NODE_10917_length_673_cov_1.741667_g10593_i0 PRJNA1195374 10917 673 1.741667 11.72141891 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 505 4.28e-138   NTclustered gi|551584285|ref|XM_005777484.1| 280463 g10593 i0 81.388 87.8246656760773 634 105 93 12 1 627 326 953 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 59106 505 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21998633 21998633 PRJNA1195374_P_NODE_55838_length_290_cov_2.101382_g55494_i0 PRJNA1195374 55838 290 2.101382 6.0940078 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 60.2 1.6e-4   NTclustered gi|551607766|ref|XM_005785126.1| 280463 g55494 i0 94.737 2.23448275862069 38 2 13 0 80 117 1055 1018 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 648 60.2 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;