RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1195374" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1195374 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2872199 2872199 PRJNA1195374_P_NODE_30263_length_411_cov_2.071006_g29919_i0 PRJNA1195374 30263 411 2.071006 8.51183466 Thecamonas trahens 529818 Root_unresolved Root_unresolved 58.4 8.49e-4   NTclustered gi|923120594|ref|XM_013898315.1| 461836 g29919 i0 92.5 0.097323600973236 40 3 10 0 365 404 347 308 Thecamonas trahens ATCC 50062 peptidyl-prolyl cis-trans isomerase Pin1 (AMSG_10292), partial mRNA blastn 40 58.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
5425164 5425164 PRJNA1195374_P_NODE_6205_length_853_cov_54.710256_g5923_i0 PRJNA1195374 6205 853 54.710256 466.67848368 Thecamonas trahens 529818 Root_unresolved Root_unresolved 163 3.8e-35   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g5923 i0 85 1.48300117233294 160 24 19 0 45 204 31 190 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 1265 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
11799757 11799757 PRJNA1195374_P_NODE_21670_length_487_cov_3.258454_g21327_i0 PRJNA1195374 21670 487 3.258454 15.86867098 Thecamonas trahens 529818 Root_unresolved Root_unresolved 219 4.42e-52   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g21327 i0 82.49 36.129363449692 257 37 52 6 37 289 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 17595 219 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;