RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1193541" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1193541 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13074285 13074285 PRJNA1193541_P_NODE_5271_length_369_cov_1.033784_g5133_i0 PRJNA1193541 5271 369 1.033784 3.81466296 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 599 9.979999999999998e-167   NTclustered gi|821341785|gb|CP011389.1| 1309411 g5133 i0 95.946 325.674796747967 370 14 100 1 1 369 1637891 1637522 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 120174 599 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
19446780 19446780 PRJNA1193541_P_NODE_8756_length_294_cov_1.045249_g8618_i0 PRJNA1193541 8756 294 1.045249 3.07303206 Deinococcus soli (ex Cha et al. 2016) 1309411 Bacteria Bacteria 538 1.7199999999999995e-148   NTclustered gi|821341785|gb|CP011389.1| 1309411 g8618 i0 99.66 195.15306122449 294 1 100 0 1 294 1638682 1638975 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 57375 538 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;