RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1192965" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1192965 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7973782 7973782 PRJNA1192965_P_NODE_3667_length_249_cov_0.875000_g3648_i0 PRJNA1192965 3667 249 0.875 2.17875 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 195 3.5399999999999996e-45   NTclustered gi|657012367|gb|KF302531.1| 2850 g3648 i0 80.876 2.5863453815261 251 44 100 4 1 249 116 364 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 644 195 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
16897617 16897617 PRJNA1192965_P_NODE_1194_length_366_cov_1.525597_g1175_i0 PRJNA1192965 1194 366 1.525597 5.58368502 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 281 4.07e-71   NTclustered gi|657012367|gb|KF302531.1| 2850 g1175 i0 92.386 82.9344262295082 197 15 54 0 10 206 219 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 30354 281 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;