RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1192965" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1192965 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9248441 9248441 PRJNA1192965_P_NODE_5088_length_241_cov_0.916667_g5069_i0 PRJNA1192965 5088 241 0.916667 2.20916747 Deinococcus gobiensis 502394 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|379998737|gb|CP002191.1| 745776 g5069 i0 100 10.1161825726141 241 0 100 0 1 241 2158131 2158371 Deinococcus gobiensis I-0, complete genome blastn 2438 446 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
15623297 15623297 PRJNA1192965_P_NODE_3913_length_248_cov_0.880000_g3894_i0 PRJNA1192965 3913 248 0.88 2.1824 Deinococcus geothermalis 68909 Bacteria Bacteria 344 3.299999999999999e-90   NTclustered gi|94554390|gb|CP000359.1| 319795 g3894 i0 93.506 0.931451612903226 231 15 93 0 18 248 314433 314203 Deinococcus geothermalis DSM 11300, complete genome blastn 231 344 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis
20721880 20721880 PRJNA1192965_P_NODE_4197_length_246_cov_0.890173_g4178_i0 PRJNA1192965 4197 246 0.890173 2.18982558 Trueperaceae bacterium 2026798 Bacteria Bacteria 355 1.51e-93   NTclustered gi|2621706202|emb|OY764543.1| 2026798 g4178 i0 93.697 959.638211382114 238 13 96 1 11 246 2559755 2559518 MAG: Trueperaceae bacterium isolate 617606ba-ac04-44ed-b980-3de5d93b502e genome assembly, chromosome: 1 blastn 236071 355 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;