RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1192965" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1192965 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7420281 7420281 PRJNA1192965_P_NODE_2586_length_274_cov_2.049751_g2567_i0 PRJNA1192965 2586 274 2.049751 5.61631774 Gammaretrovirus 153135 Viruses Viruses 501 2.08e-137   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g2567 i0 99.635 3.45620437956204 274 1 100 0 1 274 4550 4823 Moloney murine leukemia virus, complete genome blastn 947 501 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
8695389 8695389 PRJNA1192965_P_NODE_2367_length_283_cov_2.533333_g2348_i0 PRJNA1192965 2367 283 2.533333 7.16933239 root 1 Root_unresolved Root_unresolved 521 1.6599999999999996e-143   NTclustered gi|332029|gb|J02254.1|MLVENVPRM 11786 g2348 i0 100 185.862190812721 282 0 99 0 1 282 2364 2645 Moloney mink cell focus-forming proviral env gene and LTR blastn 52599 521 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
11245690 11245690 PRJNA1192965_P_NODE_2729_length_269_cov_1.244898_g2710_i0 PRJNA1192965 2729 269 1.244898 3.34877562 root 1 Root_unresolved Root_unresolved 492 1.23e-134   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g2710 i0 99.628 38.7695167286245 269 1 100 0 1 269 2325 2057 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 10429 492 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25268579 25268579 PRJNA1192965_P_NODE_1120_length_373_cov_1.886667_g1101_i0 PRJNA1192965 1120 373 1.886667 7.03726791 root 1 Root_unresolved Root_unresolved 689 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g1101 i0 100 98.7131367292225 373 0 100 0 1 373 2136 1764 Moloney murine leukemia virus, complete genome blastn 36820 689 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;