RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1192965" and tax_kingdom = "Bamfordvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA1192965 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8695390 8695390 PRJNA1192965_P_NODE_2707_length_270_cov_1.172589_g2688_i0 PRJNA1192965 2707 270 1.172589 3.1659903 root 1 Root_unresolved Root_unresolved 499 7.349999999999998e-137   NTclustered gi|1377596870|gb|MF044052.1| 10515 g2688 i0 100 100 270 0 100 0 1 270 3202 2933 human adenovirus 2 isolate HK91, complete genome blastn 27000 499 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
16344909 16344909 PRJNA1192965_P_NODE_2393_length_282_cov_2.019139_g2374_i0 PRJNA1192965 2393 282 2.019139 5.69397198 root 1 Root_unresolved Root_unresolved 516 7.67e-142   NTclustered gi|1377596870|gb|MF044052.1| 10515 g2374 i0 99.645 100 282 1 100 0 1 282 2382 2663 human adenovirus 2 isolate HK91, complete genome blastn 28200 521 0.990403071017274 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
20721887 20721887 PRJNA1192965_P_NODE_4637_length_244_cov_0.900585_g4618_i0 PRJNA1192965 4637 244 0.900585 2.1974274 Mimivirus U306 1932880 Viruses Viruses 87.9 6.03e-13   NTclustered gi|1572561086|emb|LT717347.1| 1932880 g4618 i0 75.773 30.4754098360656 194 36 78 11 55 243 877859 878046 Mimivirus U306 genome assembly, complete genome: monopartite blastn 7436 87.9 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Mimivirus Mimivirus U306

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;