RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1192965" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1192965 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13074096 13074096 PRJNA1192965_P_NODE_2051_length_298_cov_1.026667_g2032_i0 PRJNA1192965 2051 298 1.026667 3.05946766 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 383 8.65e-102   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g2032 i0 92.565 113.355704697987 269 16 90 4 32 298 2977762 2978028 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 33780 383 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
15623296 15623296 PRJNA1192965_P_NODE_3833_length_248_cov_0.880000_g3814_i0 PRJNA1192965 3833 248 0.88 2.1824 Runella sp. SP2 2268026 Bacteria Bacteria 401 1.9299999999999994e-107   NTclustered gi|1509191025|gb|CP031030.1| 2268026 g3814 i0 95.951 181.862903225806 247 10 99 0 2 248 5734442 5734688 Runella sp. SP2 chromosome, complete genome blastn 45102 401 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Runella Runella sp. SP2
17620151 17620151 PRJNA1192965_P_NODE_2334_length_285_cov_0.830189_g2315_i0 PRJNA1192965 2334 285 0.830189 2.36603865 Flavobacterium 237 Bacteria Bacteria 383 8.22e-102   NTclustered gi|2279330881|gb|CP101751.1| 2502784 g2315 i0 96.537 271.280701754386 231 8 81 0 1 231 718533 718303 Flavobacterium cerinum strain C1 chromosome, complete genome blastn 77315 383 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium cerinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;