RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1188114" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1188114 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4146943 4146943 PRJNA1188114_P_NODE_3084_length_248_cov_1.437186_g3032_i0 PRJNA1188114 3084 248 1.437186 3.56422128 Luteolibacter sp. 1962973 Bacteria Bacteria 375 1.1699999999999999e-99   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g3032 i0 94.286 95.5524193548387 245 14 100 0 1 245 1010097 1010341 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 23697 375 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
6697902 6697902 PRJNA1188114_P_NODE_4046_length_221_cov_1.546512_g3994_i0 PRJNA1188114 4046 221 1.546512 3.41779152 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 283 6.379999999999999e-72   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g3994 i0 90.61 289.588235294118 213 20 96 0 9 221 1320575 1320363 Luteolibacter sp. Populi chromosome, complete genome blastn 63999 283 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
7973243 7973243 PRJNA1188114_P_NODE_13807_length_166_cov_0.871795_g13755_i0 PRJNA1188114 13807 166 0.871795 1.4471797 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 124 2.9e-24   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g13755 i0 94.937 2.9578313253012 79 4 48 0 88 166 1970632 1970554 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 491 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
7973299 7973299 PRJNA1188114_P_NODE_2027_length_301_cov_1.214286_g1975_i0 PRJNA1188114 2027 301 1.214286 3.65500086 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 488 1.7999999999999998e-133   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g1975 i0 96.013 286.116279069767 301 10 100 2 1 301 3411428 3411726 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 86121 488 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
14348996 14348996 PRJNA1188114_P_NODE_1332_length_371_cov_1.835404_g1280_i0 PRJNA1188114 1332 371 1.835404 6.80934884 Chthoniobacter flavus 191863 Bacteria Bacteria 518 2.89e-142   NTclustered gi|183579828|emb|AM905425.1| 497964 g1280 i0 92.758 249.525606469003 359 24 96 2 1 358 2465 2108 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 92574 518 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
15622788 15622788 PRJNA1188114_P_NODE_2333_length_280_cov_1.324675_g2281_i0 PRJNA1188114 2333 280 1.324675 3.70909 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 335 2.2899999999999993e-87   NTclustered gi|2874254020|emb|OY970345.1| 412056 g2281 i0 89.219 118.971428571429 269 27 96 2 12 280 3894741 3894475 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 33312 335 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;