RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1188114" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1188114 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
320077 320077 PRJNA1188114_P_NODE_18541_length_162_cov_0.902655_g18489_i0 PRJNA1188114 18541 162 0.902655 1.4623011 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 169 1.28e-37   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18489 i0 86.452 14.7469135802469 155 19 95 2 9 162 2107147 2106994 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 2389 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5423193 5423193 PRJNA1188114_P_NODE_9285_length_178_cov_1.565891_g9233_i0 PRJNA1188114 9285 178 1.565891 2.78728598 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 143 8.689999999999998e-30   NTclustered gi|2874253978|emb|OY970303.1| 412054 g9233 i0 82.716 0.910112359550562 162 26 90 2 1 161 3794805 3794645 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 162 143 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14349050 14349050 PRJNA1188114_P_NODE_19312_length_161_cov_0.910714_g19260_i0 PRJNA1188114 19312 161 0.910714 1.46624954 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 121 3.62e-23   NTclustered gi|575456455|gb|CP007128.1| 861299 g19260 i0 89.474 1.35403726708075 95 10 59 0 65 159 4901141 4901047 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 218 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;