RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1188114" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1188114 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1594701 1594701 PRJNA1188114_P_NODE_2282_length_283_cov_1.760684_g2230_i0 PRJNA1188114 2282 283 1.760684 4.98273572 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 344 3.85e-90   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g2230 i0 88.732 176.102473498233 284 29 100 3 1 283 3251161 3250880 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 49837 344 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
16344610 16344610 PRJNA1188114_P_NODE_14333_length_165_cov_1.301724_g14281_i0 PRJNA1188114 14333 165 1.301724 2.1478446 Peredibacter 263370 Bacteria Bacteria 265 1.6299999999999998e-66   NTclustered gi|2631252187|gb|CP139487.1| 28202 g14281 i0 95.732 144.181818181818 164 7 99 0 2 165 512519 512356 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 23790 265 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
20168425 20168425 PRJNA1188114_P_NODE_8256_length_182_cov_2.759398_g8204_i0 PRJNA1188114 8256 182 2.759398 5.02210436 Bdellovibrio 958 Bacteria Bacteria 252 1.42e-62   NTclustered gi|1210342126|gb|CP020946.1| 959 g8204 i0 91.803 381.32967032967 183 11 100 3 1 182 2950414 2950235 Bdellovibrio bacteriovorus strain SSB218315, complete genome blastn 69402 252 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
23272236 23272236 PRJNA1188114_P_NODE_7499_length_185_cov_2.117647_g7447_i0 PRJNA1188114 7499 185 2.117647 3.91764695 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 195 2.48e-45   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g7447 i0 88.272 0.875675675675676 162 19 88 0 16 177 865831 865670 Bacteriovorax sp. HI3 DNA, complete genome blastn 162 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;