RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1188114" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1188114 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
320134 320134 PRJNA1188114_P_NODE_8561_length_181_cov_1.931818_g8509_i0 PRJNA1188114 8561 181 1.931818 3.49659058 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 254 3.93e-63   NTclustered gi|330902866|gb|JF298259.1| 703021 g8509 i0 92.222 98.5635359116022 180 12 99 2 1 179 960 782 Cochliopodium actinophorum clone 2101 actin gene, partial cds blastn 17840 254 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
4870156 4870156 PRJNA1188114_P_NODE_11584_length_169_cov_1.125000_g11532_i0 PRJNA1188114 11584 169 1.125 1.90125 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 2.3e-20   NTclustered gi|372290523|gb|JQ239425.1| 5755 g11532 i0 80.667 9.49112426035503 150 23 87 6 1 147 867 1013 Acanthamoeba castellanii catalase 1 mRNA, complete cds blastn 1604 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15069861 15069861 PRJNA1188114_P_NODE_8912_length_180_cov_1.167939_g8860_i0 PRJNA1188114 8912 180 1.167939 2.1022902 Eumycetozoa 142796 Evosea other_Eukaryota 200 5.15e-47   NTclustered gi|2574169421|gb|OP631025.1| 385453 g8860 i0 87.861 97.1666666666667 173 18 95 3 6 176 979 808 Polyschismium granuliferum strain MM45973 elongation factor 1-alpha (EF1a) gene, partial cds blastn 17490 200 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium granuliferum
19445986 19445986 PRJNA1188114_P_NODE_12796_length_167_cov_0.864407_g12744_i0 PRJNA1188114 12796 167 0.864407 1.44355969 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.001   NTclustered gi|470452598|ref|XM_004340584.1| 1257118 g12744 i0 94.444 0.215568862275449 36 2 22 0 1 36 1717 1752 Acanthamoeba castellanii str. Neff Cofactor of BRCA1 (COBRA1) (ACA1_155500), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19446039 19446039 PRJNA1188114_P_NODE_19996_length_161_cov_0.910714_g19944_i0 PRJNA1188114 19996 161 0.910714 1.46624954 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 193 7.55e-45   NTclustered gi|470504026|ref|XM_004348289.1| 1257118 g19944 i0 89.032 93.5341614906832 155 17 96 0 4 158 946 1100 Acanthamoeba castellanii str. Neff H(+)-transporting atpase family protein (ACA1_022710), partial mRNA blastn 15059 193 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24546066 24546066 PRJNA1188114_P_NODE_5160_length_203_cov_0.896104_g5108_i0 PRJNA1188114 5160 203 0.896104 1.81909112 Dictyostelium purpureum 5786 Evosea other_Eukaryota 163 7.83e-36   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g5108 i0 82.447 92.7635467980296 188 31 92 2 1 187 822 1008 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 18831 163 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;