RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1186363 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11798388 11798388 PRJNA1186363_P_NODE_30730_length_310_cov_1.552743_g29842_i0 PRJNA1186363 30730 310 1.552743 4.8135033 Vittaforma corneae 42399 Fungi Fungi 213 1.26e-50   NTclustered gi|667639983|ref|XR_552275.1| 993615 g29842 i0 89.474 4.68387096774194 171 15 55 2 6 176 610 777 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 1452 213 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
13795376 13795376 PRJNA1186363_P_NODE_36891_length_263_cov_1.168421_g36003_i0 PRJNA1186363 36891 263 1.168421 3.07294723 Endoreticulatus 42400 Fungi Fungi 237 6.1800000000000006e-58   NTclustered gi|63095239|gb|AY960112.1| 262393 g36003 i0 84.298 7.41825095057034 242 38 92 0 1 242 552 311 Endoreticulatus sp. CHW-2004 Taiwan alpha-tubulin gene, partial cds blastn 1951 237 1 Eukaryota Opisthokonta Fungi Microsporidia       Endoreticulatus Endoreticulatus sp. CHW-2004 Taiwan

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;