RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1186363 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6697689 6697689 PRJNA1186363_P_NODE_37806_length_256_cov_1.273224_g36918_i0 PRJNA1186363 37806 256 1.273224 3.25945344 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.006   NTclustered gi|2031942099|emb|OD958049.1| 5763 g36918 i0 100 0.11328125 29 0 11 0 215 243 7749 7777 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
13795381 13795381 PRJNA1186363_P_NODE_42211_length_245_cov_0.906977_g41323_i0 PRJNA1186363 42211 245 0.906977 2.22209365 Naegleria 5761 Heterolobosea other_Eukaryota 442 1.1199999999999994e-119   NTclustered gi|2618963742|gb|OR769034.1| 5762 g41323 i0 99.184 29.665306122449 245 2 100 0 1 245 4108 3864 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7268 442 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21996423 21996423 PRJNA1186363_P_NODE_23998_length_374_cov_3.963455_g23110_i0 PRJNA1186363 23998 374 3.963455 14.8233217 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 60.2 2.13e-4   NTclustered gi|2119421598|ref|XM_044690396.1| 51637 g23110 i0 100 0.0855614973262032 32 0 9 0 111 142 1041 1072 Naegleria lovaniensis uncharacterized protein (C9374_014411), partial mRNA blastn 32 60.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
23272013 23272013 PRJNA1186363_P_NODE_41259_length_247_cov_0.896552_g40371_i0 PRJNA1186363 41259 247 0.896552 2.21448344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 187 5.87e-43   NTclustered gi|256665307|gb|AC237578.1| 5762 g40371 i0 81.356 0.955465587044534 236 38 94 6 8 238 36903 36669 Naegleria gruberi clone JGIBGAG-5H16, complete sequence blastn 236 187 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;