RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA1186363 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2870550 2870550 PRJNA1186363_P_NODE_29523_length_320_cov_1.902834_g28635_i0 PRJNA1186363 29523 320 1.902834 6.0890688 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 337 7.4e-88   NTclustered gi|470458047|ref|XM_004341152.1| 1257118 g28635 i0 85.849 191.103125 318 43 99 2 4 320 510 194 Acanthamoeba castellanii str. Neff polyubiquitin, putative (ACA1_335920), partial mRNA blastn 61153 337 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7972907 7972907 PRJNA1186363_P_NODE_16987_length_471_cov_2.497487_g16100_i0 PRJNA1186363 16987 471 2.497487 11.76316377 Coronamoeba villafranca 2936289 Discosea other_Eukaryota 435 3.89e-117   NTclustered gi|2254079205|gb|ON260836.1| 2936289 g16100 i0 83.404 98.2547770700637 470 76 99 2 3 471 662 194 Dermamoebida sp. AKudryavtsev-2022a strain ZIN.2022.02 clone 6 actin gene, partial cds blastn 46278 435 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Coronamoeba Coronamoeba villafranca
7973059 7973059 PRJNA1186363_P_NODE_39327_length_251_cov_0.876404_g38439_i0 PRJNA1186363 39327 251 0.876404 2.19977404 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 387 5.489999999999998e-103   NTclustered gi|470395276|ref|XM_004335009.1| 1257118 g38439 i0 94.422 1 251 14 100 0 1 251 490 740 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_097280), partial mRNA blastn 251 387 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7973077 7973077 PRJNA1186363_P_NODE_41987_length_246_cov_0.901734_g41099_i0 PRJNA1186363 41987 246 0.901734 2.21826564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 372 1.5e-98   NTclustered gi|470507538|ref|XM_004367569.1| 1257118 g41099 i0 93.902 1 246 15 100 0 1 246 176 421 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_253670), partial mRNA blastn 246 372 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11798424 11798424 PRJNA1186363_P_NODE_36570_length_265_cov_1.218750_g35682_i0 PRJNA1186363 36570 265 1.21875 3.2296875 Thecamoeba similis 242545 Discosea other_Eukaryota 291 4.71e-74   NTclustered gi|33946350|gb|AY294154.1| 242545 g35682 i0 87.352 90.5056603773585 253 32 95 0 13 265 36 288 Thecamoeba similis actin mRNA, complete cds blastn 23984 291 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
15622471 15622471 PRJNA1186363_P_NODE_20473_length_417_cov_1.912791_g19585_i0 PRJNA1186363 20473 417 1.912791 7.97633847 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 582 1.1499999999999996e-161   NTclustered gi|33946346|gb|AY294152.1| 242541 g19585 i0 91.866 96.9640287769784 418 32 100 2 1 417 516 932 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 40434 582 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
15622573 15622573 PRJNA1186363_P_NODE_39373_length_251_cov_0.876404_g38485_i0 PRJNA1186363 39373 251 0.876404 2.19977404 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 448 2.48e-121   NTclustered gi|470525862|ref|XM_004356613.1| 1257118 g38485 i0 98.805 65.7729083665339 251 3 100 0 1 251 949 699 Acanthamoeba castellanii str. Neff asparagine-tRNA ligase (ACA1_174260), partial mRNA blastn 16509 448 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16896839 16896839 PRJNA1186363_P_NODE_22294_length_394_cov_0.968847_g21406_i0 PRJNA1186363 22294 394 0.968847 3.81725718 Paramoeba branchiphila 308475 Discosea other_Eukaryota 374 7.079999999999998e-99   NTclustered gi|226347442|gb|FJ807261.1| 308475 g21406 i0 84.293 87.761421319797 382 58 97 2 1 381 808 428 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 34578 374 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
16896945 16896945 PRJNA1186363_P_NODE_41754_length_246_cov_0.901734_g40866_i0 PRJNA1186363 41754 246 0.901734 2.21826564 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 422 1.47e-113   NTclustered gi|470506274|ref|XM_004348681.1| 1257118 g40866 i0 97.561 1 246 6 100 0 1 246 1414 1169 Acanthamoeba castellanii str. Neff cation exchanger, putative (ACA1_035470), partial mRNA blastn 246 422 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21996471 21996471 PRJNA1186363_P_NODE_32458_length_296_cov_1.322870_g31570_i0 PRJNA1186363 32458 296 1.32287 3.9156952 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 375 1.4399999999999995e-99   NTclustered gi|33946346|gb|AY294152.1| 242541 g31570 i0 89.761 87.7837837837838 293 30 99 0 4 296 807 515 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 25984 375 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;