RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1186363 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1594363 1594363 PRJNA1186363_P_NODE_21682_length_401_cov_1.426829_g20794_i0 PRJNA1186363 21682 401 1.426829 5.72158429 Extubocellulus spinifer 265572 SAR_Eukaryotes SAR_Eukaryotes 93.5 2.26e-14   NTclustered gi|2632235321|gb|OR922703.1| 265572 g20794 i0 79.021 0.713216957605985 143 24 36 6 207 349 5288 5424 Extubocellulus spinifer strain AGSB0090 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 286 93.5 1 Eukaryota Sar   Bacillariophyta Mediophyceae Cymatosirales Cymatosiraceae Extubocellulus Extubocellulus spinifer
20721215 20721215 PRJNA1186363_P_NODE_537_length_2051_cov_2.319009_g418_i0 PRJNA1186363 537 2051 2.319009 47.56287459 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 1162 0   NTclustered gi|398372885|gb|JX305463.1| 49249 g418 i0 78.261 67.8454412481716 1863 367 90 34 60 1903 21 1864 Ditylum brightwellii strain B-326 heat shock protein 70 (Hsp70) mRNA, complete cds blastn 139151 1162 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii
23271991 23271991 PRJNA1186363_P_NODE_38159_length_253_cov_1.572222_g37271_i0 PRJNA1186363 38159 253 1.572222 3.97772166 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 115 2.89e-21   NTclustered gi|219129599|ref|XM_002184936.1| 556484 g37271 i0 87.379 0.407114624505929 103 9 40 4 3 103 365 265 Phaeodactylum tricornutum CCAP 1055/1 homeodomain transcription factor mRNA blastn 103 115 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;