RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA1186363 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1594427 1594427 PRJNA1186363_P_NODE_2_length_8323_cov_9.857939_g1_i0 PRJNA1186363 2 8323 9.857939 820.47626297 Zebrafish picornavirus 1 2304617 Viruses Viruses 13725 0   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g1 i0 96.531 3.04613721014057 8302 277 99 10 7 8303 8298 3 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 25353 13725 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
5422948 5422948 PRJNA1186363_P_NODE_43325_length_243_cov_0.917647_g42437_i0 PRJNA1186363 43325 243 0.917647 2.22988221 Potexvirus trifolii 3433859 Viruses Viruses 405 1.46e-108   NTclustered gi|345645032|dbj|AB669182.1| 12188 g42437 i0 96.708 13.6172839506173 243 8 100 0 1 243 2511 2753 White clover mosaic virus genomic RNA, complete genome, strain: WClMV-RC blastn 3309 405 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
7973038 7973038 PRJNA1186363_P_NODE_35827_length_270_cov_2.319797_g34939_i0 PRJNA1186363 35827 270 2.319797 6.2634519 Mitovirus sp. 2587224 Viruses Viruses 226 1.38e-54   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g34939 i0 87.817 0.72962962962963 197 19 73 3 1 197 5 196 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 197 226 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
11798398 11798398 PRJNA1186363_P_NODE_32870_length_293_cov_1.250000_g31982_i0 PRJNA1186363 32870 293 1.25 3.6625 Mitovirus sp. 2587224 Viruses Viruses 274 5.33e-69   NTclustered gi|1698234317|gb|MN033515.1| 2587224 g31982 i0 91.878 0.672354948805461 197 14 67 2 97 293 196 2 MAG: Mitovirus sp. isolate H1_Rhizo_26_FD_scaffold_6751 sequence blastn 197 274 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Mitovirus sp.
14348859 14348859 PRJNA1186363_P_NODE_41432_length_247_cov_0.896552_g40544_i0 PRJNA1186363 41432 247 0.896552 2.21448344 Potexvirus trifolii 3433859 Viruses Viruses 396 8.95e-106   NTclustered gi|2520252303|gb|OQ993368.1| 12188 g40544 i0 95.547 8.99595141700405 247 11 100 0 1 247 684 930 White clover mosaic virus isolate DSMZ PV-1074, complete genome blastn 2222 396 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
24545795 24545795 PRJNA1186363_P_NODE_36980_length_262_cov_1.280423_g36092_i0 PRJNA1186363 36980 262 1.280423 3.35470826 Zebrafish picornavirus 1 2304617 Viruses Viruses 473 4.31e-129   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g36092 i0 99.237 3 262 2 100 0 1 262 4485 4746 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 786 473 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;