RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1186363 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4146748 4146748 PRJNA1186363_P_NODE_5664_length_896_cov_1.547995_g4967_i0 PRJNA1186363 5664 896 1.547995 13.8700352 Chlamydomonas reinhardtii 3055 Plants Plants 62.1 1.5e-4   NTclustered gi|2082258223|ref|XM_043067336.1| 3055 g4967 i0 86.207 3.359375 58 6 6 2 219 275 1682 1738 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467583v5), mRNA blastn 3010 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9247709 9247709 PRJNA1186363_P_NODE_36868_length_263_cov_1.231579_g35980_i0 PRJNA1186363 36868 263 1.231579 3.23905277 Chlorella variabilis 554065 Plants Plants 52.8 0.024   NTclustered gi|552828251|ref|XM_005847376.1| 554065 g35980 i0 100 0.106463878326996 28 0 11 0 1 28 2301 2328 Chlorella variabilis hypothetical protein (CHLNCDRAFT_134341) mRNA, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
18893459 18893459 PRJNA1186363_P_NODE_22255_length_394_cov_1.308411_g21367_i0 PRJNA1186363 22255 394 1.308411 5.15513934 Eukaryota 2759 Plants Plants 54.7 0.01   NTclustered gi|2082248479|ref|XM_043063354.1| 3055 g21367 i0 100 2.7258883248731 29 0 7 0 195 223 2679 2707 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g286650v5), mRNA blastn 1074 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24545718 24545718 PRJNA1186363_P_NODE_23980_length_375_cov_1.029801_g23092_i0 PRJNA1186363 23980 375 1.029801 3.86175375 Boodleopsis sp. H.0758 2320802 Plants Plants 60.2 2.13e-4   NTclustered gi|1509834938|ref|NC_039521.1| 2320802 g23092 i0 90.909 0.658666666666667 44 4 12 0 153 196 61819 61862 Boodleopsis sp. H.0758 chloroplast, complete genome blastn 247 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Boodleopsis Boodleopsis sp. H.0758
24545727 24545727 PRJNA1186363_P_NODE_25780_length_355_cov_1.680851_g24892_i0 PRJNA1186363 25780 355 1.680851 5.96702105 Volvox carteri 3067 Plants Plants 56.5 0.003   NTclustered gi|302831723|ref|XM_002947381.1| 3068 g24892 i0 100 1.2 30 0 8 0 326 355 2583 2554 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_87818), partial mRNA blastn 426 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
25268203 25268203 PRJNA1186363_P_NODE_22100_length_396_cov_1.077399_g21212_i0 PRJNA1186363 22100 396 1.077399 4.26650004 Eukaryota 2759 Plants Plants 52.8 0.038   NTclustered gi|302833282|ref|XM_002948159.1| 3068 g21212 i0 100 4.18181818181818 28 0 7 0 1 28 1187 1160 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_88603), partial mRNA blastn 1656 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;