RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1186363 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
319684 319684 PRJNA1186363_P_NODE_10081_length_653_cov_1.068966_g9204_i0 PRJNA1186363 10081 653 1.068966 6.98034798 Phycisphaerales bacterium 2052180 Bacteria Bacteria 58.4 0.001   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g9204 i0 100 0.973966309341501 31 0 5 0 351 381 1928298 1928268 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 636 58.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
319863 319863 PRJNA1186363_P_NODE_3561_length_1099_cov_3.621832_g3038_i0 PRJNA1186363 3561 1099 3.621832 39.80393368 Stieleria neptunia 2527979 Bacteria Bacteria 56.5 0.009   NTclustered gi|1712721777|gb|CP037423.1| 2527979 g3038 i0 100 0.0272975432211101 30 0 3 0 719 748 10851789 10851760 Stieleria neptunia strain Enr13 chromosome blastn 30 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Stieleria Stieleria neptunia
9247749 9247749 PRJNA1186363_P_NODE_43928_length_242_cov_0.923077_g43040_i0 PRJNA1186363 43928 242 0.923077 2.23384634 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 54.7 0.006   NTclustered gi|2874253757|emb|OY969698.1| 100233 g43040 i0 100 0.582644628099174 29 0 12 0 202 230 2534415 2534443 MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 blastn 141 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;