RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1186363" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 12 ✖

bioproject 1

  • PRJNA1186363 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6144836 6144836 PRJNA1186363_P_NODE_38005_length_254_cov_1.662983_g37117_i0 PRJNA1186363 38005 254 1.662983 4.22397682 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 200 7.78e-47   NTclustered gi|45686188|gb|AY568293.1| 5656 g37117 i0 83.41 75.8425196850394 217 34 85 2 7 222 1604 1819 Crithidia fasciculata paraflagellar rod protein (PFR2) mRNA, complete cds blastn 19264 202 0.99009900990099 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
6697689 6697689 PRJNA1186363_P_NODE_37806_length_256_cov_1.273224_g36918_i0 PRJNA1186363 37806 256 1.273224 3.25945344 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 54.7 0.006   NTclustered gi|2031942099|emb|OD958049.1| 5763 g36918 i0 100 0.11328125 29 0 11 0 215 243 7749 7777 Naegleria fowleri Karachi_NF001 strain blastn 29 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
7972890 7972890 PRJNA1186363_P_NODE_15467_length_501_cov_1.995327_g14581_i0 PRJNA1186363 15467 501 1.995327 9.99658827 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 52.8 0.049   NTclustered gi|2794993361|ref|XM_067850475.1| 2802991 g14581 i0 100 0.0558882235528942 28 0 6 0 179 206 1208 1181 Leishmania sp. Namibia uncharacterized protein (JIQ42_02267), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia
11798415 11798415 PRJNA1186363_P_NODE_35350_length_274_cov_1.552239_g34462_i0 PRJNA1186363 35350 274 1.552239 4.25313486 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 412 9.999999999999999e-111   NTclustered gi|62871455|gb|AY998642.1| 127150 g34462 i0 94.161 89.4416058394161 274 10 100 5 1 274 1144 1411 Rhynchomonas nasuta strain SCCAP RH3 18S ribosomal RNA gene, partial sequence blastn 24507 412 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
13795381 13795381 PRJNA1186363_P_NODE_42211_length_245_cov_0.906977_g41323_i0 PRJNA1186363 42211 245 0.906977 2.22209365 Naegleria 5761 Heterolobosea other_Eukaryota 442 1.1199999999999994e-119   NTclustered gi|2618963742|gb|OR769034.1| 5762 g41323 i0 99.184 29.665306122449 245 2 100 0 1 245 4108 3864 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 7268 442 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18893456 18893456 PRJNA1186363_P_NODE_21215_length_407_cov_1.913174_g20327_i0 PRJNA1186363 21215 407 1.913174 7.78661818 Reclinomonas 48482 Root_unresolved Root_unresolved 165 4.8100000000000004e-36   NTclustered gi|462269548|gb|KC353356.1| 1295593 g20327 i0 84.302 1.6977886977887 172 23 42 4 5 174 53594 53425 Reclinomonas americana ATCC 50633 mitochondrion, complete genome blastn 691 165 1 Eukaryota Discoba       Jakobida Histionidae Reclinomonas Reclinomonas americana
18893476 18893476 PRJNA1186363_P_NODE_33235_length_290_cov_1.437788_g32347_i0 PRJNA1186363 33235 290 1.437788 4.1695852 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 250 8.87e-62   NTclustered gi|25986836|gb|AY122632.1| 75058 g32347 i0 82.624 95.648275862069 282 49 97 0 9 290 907 1188 Bodo saltans strain Konstanz heat shock protein 90 (HSP-90) gene, partial cds blastn 27738 250 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
21443920 21443920 PRJNA1186363_P_NODE_19797_length_426_cov_1.617564_g18909_i0 PRJNA1186363 19797 426 1.617564 6.89082264 Trypanosoma 5690 Euglenozoa other_Eukaryota 54.7 0.011   NTclustered gi|2785782148|ref|XM_067222528.1| 5694 g18909 i0 100 0.204225352112676 29 0 7 0 388 416 1630 1602 Trypanosoma equiperdum uncharacterized protein (TEOVI_000041500), partial mRNA blastn 87 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma equiperdum
21996423 21996423 PRJNA1186363_P_NODE_23998_length_374_cov_3.963455_g23110_i0 PRJNA1186363 23998 374 3.963455 14.8233217 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 60.2 2.13e-4   NTclustered gi|2119421598|ref|XM_044690396.1| 51637 g23110 i0 100 0.0855614973262032 32 0 9 0 111 142 1041 1072 Naegleria lovaniensis uncharacterized protein (C9374_014411), partial mRNA blastn 32 60.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
21996447 21996447 PRJNA1186363_P_NODE_28358_length_331_cov_1.205426_g27470_i0 PRJNA1186363 28358 331 1.205426 3.98996006 Rhynchomonas nasuta 127150 Euglenozoa other_Eukaryota 359 1.64e-94   NTclustered gi|62871455|gb|AY998642.1| 127150 g27470 i0 86.486 97.888217522658607 333 38 100 5 1 331 630 957 Rhynchomonas nasuta strain SCCAP RH3 18S ribosomal RNA gene, partial sequence blastn 32401 359 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida Rhynchomonadidae Rhynchomonas Rhynchomonas nasuta
23272013 23272013 PRJNA1186363_P_NODE_41259_length_247_cov_0.896552_g40371_i0 PRJNA1186363 41259 247 0.896552 2.21448344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 187 5.87e-43   NTclustered gi|256665307|gb|AC237578.1| 5762 g40371 i0 81.356 0.955465587044534 236 38 94 6 8 238 36903 36669 Naegleria gruberi clone JGIBGAG-5H16, complete sequence blastn 236 187 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24545788 24545788 PRJNA1186363_P_NODE_35680_length_272_cov_1.150754_g34792_i0 PRJNA1186363 35680 272 1.150754 3.13005088 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 52.8 0.025   NTclustered gi|2794993361|ref|XM_067850475.1| 2802991 g34792 i0 100 0.102941176470588 28 0 10 0 228 255 1181 1208 Leishmania sp. Namibia uncharacterized protein (JIQ42_02267), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;