RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1182301 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
318707 318707 PRJNA1182301_P_NODE_38381_length_264_cov_1.612565_g38256_i0 PRJNA1182301 38381 264 1.612565 4.2571716 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 148 2.9899999999999995e-31   NTclustered gi|2874253978|emb|OY970303.1| 412054 g38256 i0 79.439 36.4242424242424 214 40 94 4 1 212 1437732 1437521 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 9616 148 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
318957 318957 PRJNA1182301_P_NODE_49081_length_251_cov_0.865169_g48956_i0 PRJNA1182301 49081 251 0.865169 2.17157419 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 248 2.7e-61   NTclustered gi|2874253978|emb|OY970303.1| 412054 g48956 i0 84.524 36.9402390438247 252 37 100 2 1 251 3084124 3083874 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 9272 248 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9246330 9246330 PRJNA1182301_P_NODE_29708_length_275_cov_2.321782_g29583_i0 PRJNA1182301 29708 275 2.321782 6.3849005 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 134 8.77e-27   NTclustered gi|226088597|dbj|AP009153.1| 379066 g29583 i0 80.952 1.22181818181818 168 32 61 0 86 253 133562 133729 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 336 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
9246641 9246641 PRJNA1182301_P_NODE_41708_length_260_cov_1.267380_g41583_i0 PRJNA1182301 41708 260 1.26738 3.295188 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 292 1.28e-74   NTclustered gi|2874253728|emb|OY969570.1| 412054 g41583 i0 87.209 0.992307692307692 258 31 99 2 4 260 4661351 4661607 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 258 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11796661 11796661 PRJNA1182301_P_NODE_13990_length_310_cov_3.729958_g13865_i0 PRJNA1182301 13990 310 3.729958 11.5628698 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 110 1.69e-19   NTclustered gi|2874253995|emb|OY970320.1| 246130 g13865 i0 81.429 1.25483870967742 140 21 45 5 169 306 91492 91628 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 389 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
11797863 11797863 PRJNA1182301_P_NODE_63630_length_241_cov_0.916667_g63505_i0 PRJNA1182301 63630 241 0.916667 2.20916747 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 296 9.08e-76   NTclustered gi|2874253728|emb|OY969570.1| 412054 g63505 i0 88.843 2.00414937759336 242 25 100 2 1 241 3221904 3222144 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 483 296 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13072114 13072114 PRJNA1182301_P_NODE_34191_length_269_cov_2.719388_g34066_i0 PRJNA1182301 34191 269 2.719388 7.31515372 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 414 2.73e-111   NTclustered gi|2874253728|emb|OY969570.1| 412054 g34066 i0 94.424 3.20446096654275 269 15 100 0 1 269 1684904 1685172 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 862 414 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14347184 14347184 PRJNA1182301_P_NODE_18412_length_291_cov_2.784404_g18287_i0 PRJNA1182301 18412 291 2.784404 8.10261564 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 383 8.42e-102   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18287 i0 90.378 6.96219931271478 291 28 100 0 1 291 3948899 3948609 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 2026 383 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;