RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1182301 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16895248 16895248 PRJNA1182301_P_NODE_1614_length_636_cov_2.625222_g1494_i0 PRJNA1182301 1614 636 2.625222 16.69641192 Chlamydomonas incerta 51695 Plants Plants 350 2e-91   NTclustered gi|74272614|gb|DQ122872.1| 51695 g1494 i0 77.597 10.5125786163522 616 112 94 21 40 636 956 348 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 6686 350 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
19444610 19444610 PRJNA1182301_P_NODE_36176_length_267_cov_1.530928_g36051_i0 PRJNA1182301 36176 267 1.530928 4.08757776 Trebouxia sp. SL0000003 3350044 Plants Plants 75 5.21e-9   NTclustered gi|2917929624|emb|OZ234912.1| 3350044 g36051 i0 100 0.299625468164794 40 0 15 0 4 43 350854 350893 Trebouxia sp. SL0000003 genome assembly, chromosome: 7 blastn 80 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
22718663 22718663 PRJNA1182301_P_NODE_58098_length_244_cov_2.684211_g57973_i0 PRJNA1182301 58098 244 2.684211 6.54947484 Chlorophyta 3041 Plants Plants 374 4.1399999999999986e-99   NTclustered gi|2445342045|gb|OP765320.1| 34112 g57973 i0 94.606 104.065573770492 241 13 99 0 4 244 56415 56175 Chlorolobion braunii chloroplast, complete genome blastn 25392 375 0.997333333333333 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Chlorolobion Chlorolobion braunii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;