RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1182301 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2869210 2869210 PRJNA1182301_P_NODE_28223_length_277_cov_2.446078_g28098_i0 PRJNA1182301 28223 277 2.446078 6.77563606 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 255 1.81e-63   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g28098 i0 83.824 1.15523465703971 272 41 97 3 8 277 571039 571309 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 320 255 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
7972225 7972225 PRJNA1182301_P_NODE_52347_length_248_cov_3.034286_g52222_i0 PRJNA1182301 52347 248 3.034286 7.52502928 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 195 3.52e-45   NTclustered gi|2874253725|emb|OY969567.1| 1672391 g52222 i0 81.967 84.4596774193548 244 30 96 12 12 248 2576495 2576731 MAG: uncultured Chloroflexia bacterium isolate MFD01561.bin.c.1 genome assembly, chromosome: 1 blastn 20946 195 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
7972363 7972363 PRJNA1182301_P_NODE_58267_length_244_cov_2.128655_g58142_i0 PRJNA1182301 58267 244 2.128655 5.1939182 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 78.7 3.63e-10   NTclustered gi|2874253698|emb|OY969424.1| 1672391 g58142 i0 83.951 0.532786885245902 81 13 33 0 155 235 783095 783175 MAG: uncultured Chloroflexia bacterium isolate MFD06229.bin.c.1 genome assembly, chromosome: 1 blastn 130 78.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
11244875 11244875 PRJNA1182301_P_NODE_37849_length_265_cov_1.255208_g37724_i0 PRJNA1182301 37849 265 1.255208 3.3263012 Chloroflexota 200795 Bacteria Bacteria 189 1.7699999999999996e-43   NTclustered gi|2874254062|emb|OY970386.1| 1672391 g37724 i0 82.353 74.4188679245283 221 35 83 4 47 265 1710867 1710649 MAG: uncultured Chloroflexia bacterium isolate MFD03726.bin.c.14 genome assembly, chromosome: 1 blastn 19721 189 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
23271374 23271374 PRJNA1182301_P_NODE_62019_length_242_cov_0.911243_g61894_i0 PRJNA1182301 62019 242 0.911243 2.20520806 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 209 1.22e-49   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g61894 i0 82.377 6.44214876033058 244 40 100 3 1 242 6578780 6579022 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 1559 209 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;