contig_metadata
12 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318814 | 318814 | PRJNA1182301_P_NODE_42921_length_258_cov_1.664865_g42796_i0 | PRJNA1182301 | 42921 | 258 | 1.664865 | 4.2953517 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 346 | 9.619999999999999e-91 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g42796 | i0 | 91.016 | 2.96511627906977 | 256 | 23 | 99 | 0 | 3 | 258 | 3010722 | 3010467 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 765 | 346 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 1593131 | 1593131 | PRJNA1182301_P_NODE_31282_length_273_cov_2.140000_g31157_i0 | PRJNA1182301 | 31282 | 273 | 2.14 | 5.8422 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 348 | 2.85e-91 | NTclustered | gi|1326041851|gb|CP025704.1| | 960 | g31157 | i0 | 91.968 | 2.78021978021978 | 249 | 19 | 91 | 1 | 1 | 248 | 3733080 | 3732832 | Bacteriovorax stolpii strain DSM 12778 chromosome, complete genome | blastn | 759 | 348 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 1593392 | 1593392 | PRJNA1182301_P_NODE_41602_length_260_cov_1.481283_g41477_i0 | PRJNA1182301 | 41602 | 260 | 1.481283 | 3.8513358 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 464 | 2.57e-126 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g41477 | i0 | 98.846 | 770.953846153846 | 260 | 3 | 100 | 0 | 1 | 260 | 1661416 | 1661157 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 200448 | 464 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 1593474 | 1593474 | PRJNA1182301_P_NODE_45222_length_255_cov_1.692308_g45097_i0 | PRJNA1182301 | 45222 | 255 | 1.692308 | 4.3153854 | Halobacteriovorax sp. BALOs_7 | 2109558 | Bacteria | Bacteria | 207 | 4.67e-49 | NTclustered | gi|1486380477|gb|CP027772.1| | 2109558 | g45097 | i0 | 84.112 | 0.83921568627451 | 214 | 34 | 84 | 0 | 12 | 225 | 2937959 | 2937746 | Halobacteriovorax sp. BALOs_7 chromosome, complete genome | blastn | 214 | 207 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Halobacteriovoraceae | Halobacteriovorax | Halobacteriovorax sp. BALOs_7 | ||
| 2869918 | 2869918 | PRJNA1182301_P_NODE_59003_length_244_cov_0.900585_g58878_i0 | PRJNA1182301 | 59003 | 244 | 0.900585 | 2.1974274 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 351 | 1.9399999999999998e-92 | NTclustered | gi|1326041851|gb|CP025704.1| | 960 | g58878 | i0 | 92.623 | 3 | 244 | 18 | 100 | 0 | 1 | 244 | 1266802 | 1267045 | Bacteriovorax stolpii strain DSM 12778 chromosome, complete genome | blastn | 732 | 351 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 4145367 | 4145367 | PRJNA1182301_P_NODE_30464_length_274_cov_2.189055_g30339_i0 | PRJNA1182301 | 30464 | 274 | 2.189055 | 5.9980107 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 466 | 7.58e-127 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g30339 | i0 | 97.445 | 3 | 274 | 5 | 100 | 2 | 1 | 274 | 3627202 | 3627473 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 822 | 466 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 9246919 | 9246919 | PRJNA1182301_P_NODE_54708_length_247_cov_0.885057_g54583_i0 | PRJNA1182301 | 54708 | 247 | 0.885057 | 2.18609079 | Bacteriovorax sp. HI3 | 2984118 | Bacteria | Bacteria | 224 | 4.469999999999999e-54 | NTclustered | gi|2321225508|dbj|AP026946.1| | 2984118 | g54583 | i0 | 83.065 | 1.00404858299595 | 248 | 40 | 100 | 2 | 1 | 247 | 2355275 | 2355521 | Bacteriovorax sp. HI3 DNA, complete genome | blastn | 248 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax sp. HI3 | ||
| 16895709 | 16895709 | PRJNA1182301_P_NODE_34734_length_269_cov_1.387755_g34609_i0 | PRJNA1182301 | 34734 | 269 | 1.387755 | 3.73306095 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 492 | 1.23e-134 | NTclustered | gi|2800920897|gb|CP168968.1| | 959 | g34609 | i0 | 99.628 | 1 | 269 | 1 | 100 | 0 | 1 | 269 | 1881961 | 1881693 | Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome | blastn | 269 | 492 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 18170521 | 18170521 | PRJNA1182301_P_NODE_47595_length_252_cov_1.720670_g47470_i0 | PRJNA1182301 | 47595 | 252 | 1.72067 | 4.3360884 | Bacteriovorax stolpii | 960 | Bacteria | Bacteria | 409 | 1.18e-109 | NTclustered | gi|1700689994|gb|CP030035.1| | 960 | g47470 | i0 | 96.016 | 1.99206349206349 | 251 | 10 | 99 | 0 | 2 | 252 | 2115309 | 2115559 | Bacteriovorax stolpii strain AC01 chromosome, complete genome | blastn | 502 | 409 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax stolpii | ||
| 20168160 | 20168160 | PRJNA1182301_P_NODE_64416_length_238_cov_2.909091_g64291_i0 | PRJNA1182301 | 64416 | 238 | 2.909091 | 6.92363658 | Bdellovibrionota | 3018035 | Bacteria | Bacteria | 440 | 3.899999999999999e-119 | NTclustered | gi|2086745572|gb|MZ934718.1| | 959 | g64291 | i0 | 100 | 127.86974789916 | 238 | 0 | 100 | 0 | 1 | 238 | 122 | 359 | Bdellovibrio bacteriovorus strain MK1 16S ribosomal RNA gene, partial sequence | blastn | 30433 | 440 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 21443290 | 21443290 | PRJNA1182301_P_NODE_16537_length_300_cov_3.008811_g16412_i0 | PRJNA1182301 | 16537 | 300 | 3.008811 | 9.026433 | Peredibacter | 263370 | Bacteria | Bacteria | 527 | 3.799999999999999e-145 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g16412 | i0 | 98.333 | 178.813333333333 | 300 | 5 | 100 | 0 | 1 | 300 | 511508 | 511209 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 53644 | 527 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 21995040 | 21995040 | PRJNA1182301_P_NODE_26078_length_280_cov_2.589372_g25953_i0 | PRJNA1182301 | 26078 | 280 | 2.589372 | 7.2502416 | Bacteriovorax sp. HI3 | 2984118 | Bacteria | Bacteria | 289 | 1.81e-73 | NTclustered | gi|2321225508|dbj|AP026946.1| | 2984118 | g25953 | i0 | 85.357 | 1 | 280 | 40 | 100 | 1 | 1 | 280 | 3823893 | 3824171 | Bacteriovorax sp. HI3 DNA, complete genome | blastn | 280 | 289 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovorax | Bacteriovorax sp. HI3 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;