RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1182301 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1593833 1593833 PRJNA1182301_P_NODE_60462_length_243_cov_0.905882_g60337_i0 PRJNA1182301 60462 243 0.905882 2.20129326 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g60337 i0 99.177 7.94650205761317 243 2 100 0 1 243 1863460 1863218 Leptotrichia sp. SK-5 DNA, complete genome blastn 1931 438 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
4145804 4145804 PRJNA1182301_P_NODE_48824_length_251_cov_0.865169_g48699_i0 PRJNA1182301 48824 251 0.865169 2.17157419 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1276714546|gb|CP024702.1| 2663009 g48699 i0 100 111.458167330677 251 0 100 0 1 251 2158484 2158734 Fusobacterium pseudoperiodonticum strain KCOM 1282 chromosome, complete genome blastn 27976 464 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
6696624 6696624 PRJNA1182301_P_NODE_42666_length_258_cov_2.470270_g42541_i0 PRJNA1182301 42666 258 2.47027 6.3732966 Fusobacterium nucleatum 851 Bacteria Bacteria 477 3.2699999999999985e-130   NTclustered gi|2704983719|gb|CP077132.1| 851 g42541 i0 100 80.9341085271318 258 0 100 0 1 258 496130 496387 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 20881 477 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7972652 7972652 PRJNA1182301_P_NODE_7527_length_379_cov_1.477124_g7402_i0 PRJNA1182301 7527 379 1.477124 5.59829996 Leptotrichia sp. HMT-225 3058373 Bacteria Bacteria 684 0   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g7402 i0 99.208 491.88654353562 379 3 100 0 1 379 197714 197336 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 186425 684 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
9246623 9246623 PRJNA1182301_P_NODE_41068_length_260_cov_2.684492_g40943_i0 PRJNA1182301 41068 260 2.684492 6.9796792 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 60.2 1.42e-4   NTclustered gi|2705022034|gb|CP084128.1| 2663009 g40943 i0 92.857 0.611538461538462 42 1 31 2 71 111 136054 136094 Fusobacterium pseudoperiodonticum strain KCOM1322 chromosome, complete genome blastn 159 60.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
18170938 18170938 PRJNA1182301_P_NODE_65735_length_234_cov_2.366460_g65610_i0 PRJNA1182301 65735 234 2.36646 5.5375164 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 433 6.41e-117   NTclustered gi|1276714546|gb|CP024702.1| 2663009 g65610 i0 100 44.3376068376068 234 0 100 0 1 234 1489258 1489491 Fusobacterium pseudoperiodonticum strain KCOM 1282 chromosome, complete genome blastn 10375 433 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
21995153 21995153 PRJNA1182301_P_NODE_31258_length_273_cov_2.190000_g31133_i0 PRJNA1182301 31258 273 2.19 5.9787 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 505 1.6e-138   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g31133 i0 100 21.956043956044 273 0 100 0 1 273 894573 894845 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 5994 505 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;