RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJNA1182301 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
319235 319235 PRJNA1182301_P_NODE_60721_length_243_cov_0.905882_g60596_i0 PRJNA1182301 60721 243 0.905882 2.20129326 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 207 4.42e-49   NTclustered gi|2874253892|emb|OY970067.1| 991135 g60596 i0 83.482 0.921810699588477 224 35 92 2 15 237 407211 407433 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 224 207 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
6696978 6696978 PRJNA1182301_P_NODE_57666_length_245_cov_0.895349_g57541_i0 PRJNA1182301 57666 245 0.895349 2.19360505 Candidatus Saccharibacteria bacterium oral taxon 488 713059 Bacteria Bacteria 342 1.17e-89   NTclustered gi|1805661181|gb|CP047921.1| 713059 g57541 i0 91.837 9.95510204081633 245 20 100 0 1 245 816505 816261 Candidatus Saccharibacteria bacterium oral taxon 488 strain FS05P-B chromosome, complete genome blastn 2439 342 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
15621618 15621618 PRJNA1182301_P_NODE_46593_length_253_cov_2.250000_g46468_i0 PRJNA1182301 46593 253 2.25 5.6925 Candidatus Minimicrobia vallesae 2841264 Bacteria Bacteria 401 1.9799999999999994e-107   NTclustered gi|2052594292|gb|CP076459.1| 2841264 g46468 i0 95.257 6.91304347826087 253 12 100 0 1 253 434458 434206 Candidatus Minimicrobia vallesae isolate IHU2 chromosome, complete genome blastn 1749 401 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Minimicrobia Candidatus Minimicrobia vallesae
19444346 19444346 PRJNA1182301_P_NODE_25416_length_281_cov_2.072115_g25291_i0 PRJNA1182301 25416 281 2.072115 5.82264315 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 412 1.0299999999999997e-110   NTclustered gi|2306607015|emb|OX335598.1| 2026720 g25291 i0 93.214 2.98932384341637 280 19 99 0 1 280 603439 603160 Candidatus Saccharibacteria bacterium isolate PRJEB56001 genome assembly, chromosome: contig00001 blastn 840 412 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
23271133 23271133 PRJNA1182301_P_NODE_52699_length_248_cov_1.760000_g52574_i0 PRJNA1182301 52699 248 1.76 4.3648 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 215 2.7e-51   NTclustered gi|2874253892|emb|OY970067.1| 991135 g52574 i0 85.437 4.37903225806452 206 30 83 0 17 222 285053 284848 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 1086 215 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;