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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1182301" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1182301 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1041932 1041932 PRJNA1182301_P_NODE_9561_length_351_cov_1.892086_g9436_i0 PRJNA1182301 9561 351 1.892086 6.64122186 Didymium 5792 Evosea other_Eukaryota 627 4.329999999999999e-175   NTclustered gi|117165666|dbj|AB259388.1| 289975 g9436 i0 98.86 100.783475783476 351 4 100 0 1 351 426 76 Didymium bahiense gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: TNS-M-Y-4948 (TNS) blastn 35375 627 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium bahiense
4869619 4869619 PRJNA1182301_P_NODE_32664_length_271_cov_2.722222_g32539_i0 PRJNA1182301 32664 271 2.722222 7.37722162 Didymium 5792 Evosea other_Eukaryota 494 3.44e-135   NTclustered gi|126508458|gb|EF118757.1| 428393 g32539 i0 99.63 92.3542435424354 270 1 99 0 1 270 481 212 Didymium sp. strain ECH14/I small subunit ribosomal RNA gene, partial sequence blastn 25028 494 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium sp. ECH14/I
10521622 10521622 PRJNA1182301_P_NODE_1149_length_727_cov_2.441896_g1033_i0 PRJNA1182301 1149 727 2.441896 17.75258392 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 1271 0   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g1033 i0 98.212 8.85144429160935 727 13 100 0 1 727 4164 3438 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6435 1271 1 Eukaryota Amoebozoa             Amoebozoa sp.
15069331 15069331 PRJNA1182301_P_NODE_38772_length_263_cov_2.431579_g38647_i0 PRJNA1182301 38772 263 2.431579 6.39505277 Entamoeba 5758 Evosea other_Eukaryota 52.8 0.024   NTclustered gi|67466604|ref|XM_644358.1| 294381 g38647 i0 100 0.212927756653992 28 0 11 0 101 128 1917 1890 Entamoeba histolytica HM-1:IMSS long-chain-fatty-acid--CoA ligase, putative (EHI_188590), partial mRNA blastn 56 52.8 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
15620881 15620881 PRJNA1182301_P_NODE_16813_length_298_cov_2.053333_g16688_i0 PRJNA1182301 16813 298 2.053333 6.11893234 Didymium sp. CCIKV 1215981 Evosea other_Eukaryota 529 1.0499999999999996e-145   NTclustered gi|399764169|gb|JQ271680.1| 1215981 g16688 i0 98.658 98.4496644295302 298 4 100 0 1 298 1116 819 Didymium sp. CCIKV 18S ribosomal RNA gene, partial sequence blastn 29338 529 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium sp. CCIKV
16896506 16896506 PRJNA1182301_P_NODE_7014_length_387_cov_2.452229_g6889_i0 PRJNA1182301 7014 387 2.452229 9.49012623 Didymium iridis 5793 Evosea other_Eukaryota 514 3.92e-141   NTclustered gi|2687|emb|X60210.1| 5793 g6889 i0 90.561 9.91214470284238 392 31 100 6 1 387 5056 5446 D.iridis LSU rRNA gene blastn 3836 514 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
19444119 19444119 PRJNA1182301_P_NODE_16616_length_300_cov_1.356828_g16491_i0 PRJNA1182301 16616 300 1.356828 4.070484 Didymium iridis 5793 Evosea other_Eukaryota 401 2.4099999999999992e-107   NTclustered gi|116010574|emb|AM407419.1| 5793 g16491 i0 90.85 45.9 306 18 100 10 1 300 814 1115 Didymium iridis partial 26S rRNA gene, isolate Pan3-3 blastn 13770 401 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;