RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1180292" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1180292 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2868699 2868699 PRJNA1180292_P_NODE_5463_length_299_cov_1.035398_g5331_i0 PRJNA1180292 5463 299 1.035398 3.09584002 Patella vulgata 6465 Mollusca Mollusca 252 2.55e-62   NTclustered gi|2506343322|ref|XM_050562954.2| 6465 g5331 i0 81.879 9.81270903010033 298 54 99 0 2 299 3303 3600 PREDICTED: Patella vulgata splicing factor 3B subunit 1 (LOC126832243), transcript variant X1, mRNA blastn 2934 252 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
2868704 2868704 PRJNA1180292_P_NODE_5743_length_291_cov_1.082569_g5611_i0 PRJNA1180292 5743 291 1.082569 3.15027579 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.027   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g5611 i0 96.774 0.106529209621993 31 1 11 0 261 291 57848686 57848716 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
4144810 4144810 PRJNA1180292_P_NODE_6284_length_280_cov_1.507246_g6152_i0 PRJNA1180292 6284 280 1.507246 4.2202888 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912991694|dbj|AP039596.1| 145626 g6152 i0 100 0.1 28 0 10 0 24 51 27170673 27170700 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 15, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
9245745 9245745 PRJNA1180292_P_NODE_3308_length_378_cov_0.822951_g3176_i0 PRJNA1180292 3308 378 0.822951 3.11075478 Mya arenaria 6604 Mollusca Mollusca 54.7 0.01   NTclustered gi|2427467042|ref|XM_052939866.1| 6604 g3176 i0 100 0.153439153439153 29 0 8 0 219 247 938 966 PREDICTED: Mya arenaria cell division control protein 42 homolog (LOC128228518), transcript variant X1, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
15068940 15068940 PRJNA1180292_P_NODE_13212_length_237_cov_2.378049_g13080_i0 PRJNA1180292 13212 237 2.378049 5.63597613 Metazoa 33208 Mollusca Mollusca 161 3.3899999999999995e-35   NTclustered gi|2334780997|ref|XM_052213963.1| 6549 g13080 i0 79.487 25.1054852320675 234 42 97 6 1 231 860 1090 PREDICTED: Mytilus californianus S-adenosylmethionine synthase-like (LOC127708817), mRNA blastn 5950 161 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
16894989 16894989 PRJNA1180292_P_NODE_4854_length_315_cov_1.301653_g4722_i0 PRJNA1180292 4854 315 1.301653 4.10020695 Mercenaria mercenaria 6596 Mollusca Mollusca 76.8 1.75e-9   NTclustered gi|2442001482|ref|XM_053522755.1| 6596 g4722 i0 80.374 2.63174603174603 107 15 35 6 6 112 406 306 PREDICTED: Mercenaria mercenaria keratin-associated protein 19-2-like (LOC123528192), transcript variant X2, mRNA blastn 829 76.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
20719207 20719207 PRJNA1180292_P_NODE_2117_length_467_cov_1.868020_g1985_i0 PRJNA1180292 2117 467 1.86802 8.7236534 Littorina saxatilis 31220 Mollusca Mollusca 305 3.15e-78   NTclustered gi|2868633896|ref|XM_070320054.1| 31220 g1985 i0 78.618 26.9036402569593 463 97 99 2 6 467 321 782 PREDICTED: Littorina saxatilis small ribosomal subunit protein uS7-like (LOC138948500), mRNA blastn 12564 305 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
22718128 22718128 PRJNA1180292_P_NODE_11798_length_245_cov_0.906977_g11666_i0 PRJNA1180292 11798 245 0.906977 2.22209365 Metazoa 33208 Mollusca Mollusca 52.8 0.022   NTclustered gi|2751266908|ref|XM_011434352.4| 29159 g11666 i0 100 0.342857142857143 28 0 11 0 29 56 1925 1898 PREDICTED: Magallana gigas RNA-binding protein 5 (LOC105331958), mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;