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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1180292" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1180292 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1592564 1592564 PRJNA1180292_P_NODE_6302_length_280_cov_1.130435_g6170_i0 PRJNA1180292 6302 280 1.130435 3.165218 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 390 4.809999999999999e-104   NTclustered gi|2874253728|emb|OY969570.1| 412054 g6170 i0 91.844 229.564285714286 282 20 100 3 1 280 173394 173114 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 64278 390 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
4144724 4144724 PRJNA1180292_P_NODE_10224_length_248_cov_0.891429_g10092_i0 PRJNA1180292 10224 248 0.891429 2.21074392 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 113 1.01e-20   NTclustered gi|2874254107|emb|OY970192.1| 412054 g10092 i0 84.483 0.467741935483871 116 16 46 2 36 150 2557201 2557087 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 116 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5420926 5420926 PRJNA1180292_P_NODE_11745_length_245_cov_0.906977_g11613_i0 PRJNA1180292 11745 245 0.906977 2.22209365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 265 2.61e-66   NTclustered gi|2874253938|emb|OY970263.1| 412054 g11613 i0 87.946 43.5918367346939 224 27 91 0 4 227 1058936 1058713 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 10680 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5420965 5420965 PRJNA1180292_P_NODE_4405_length_330_cov_1.206226_g4273_i0 PRJNA1180292 4405 330 1.206226 3.9805458 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 449 9.43e-122   NTclustered gi|2874253978|emb|OY970303.1| 412054 g4273 i0 91.541 144.248484848485 331 21 99 5 1 329 8176137 8175812 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 47602 449 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6695717 6695717 PRJNA1180292_P_NODE_12946_length_242_cov_0.923077_g12814_i0 PRJNA1180292 12946 242 0.923077 2.23384634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 309 1.17e-79   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12814 i0 89.919 135.669421487603 248 13 100 7 1 242 5916994 5916753 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 32832 309 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11244536 11244536 PRJNA1180292_P_NODE_11929_length_244_cov_0.912281_g11797_i0 PRJNA1180292 11929 244 0.912281 2.22596564 Gemmatimonadaceae 219687 Bacteria Bacteria 351 1.9399999999999998e-92   NTclustered gi|470475286|ref|NR_076270.1| 173480 g11797 i0 94.76 431.954918032787 229 7 93 5 1 226 672 898 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 105397 353 0.994334277620397 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
19443916 19443916 PRJNA1180292_P_NODE_8116_length_253_cov_0.866667_g7984_i0 PRJNA1180292 8116 253 0.866667 2.19266751 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 228 3.549999999999999e-55   NTclustered gi|2874253755|emb|OY969695.1| 412054 g7984 i0 84.1 51.9209486166008 239 34 94 4 1 237 187899 188135 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 13136 228 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20719277 20719277 PRJNA1180292_P_NODE_8977_length_251_cov_0.876404_g8845_i0 PRJNA1180292 8977 251 0.876404 2.19977404 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 246 9.72e-61   NTclustered gi|2557482281|gb|CP130612.1| 3062599 g8845 i0 84.836 3.07569721115538 244 37 97 0 8 251 2517013 2516770 Pseudogemmatithrix spongiicola strain 138 chromosome, complete genome blastn 772 246 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;