RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1180292" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1180292 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5421000 5421000 PRJNA1180292_P_NODE_6965_length_267_cov_2.814433_g6833_i0 PRJNA1180292 6965 267 2.814433 7.51453611 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.024   NTclustered gi|66823700|ref|XM_640113.1| 352472 g6833 i0 100 0.104868913857678 28 0 10 0 3 30 791 764 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0272404) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
18169527 18169527 PRJNA1180292_P_NODE_6775_length_271_cov_1.181818_g6643_i0 PRJNA1180292 6775 271 1.181818 3.20272678 Endolimax carassius 2949625 Evosea other_Eukaryota 435 2.11e-117   NTclustered gi|2247024974|gb|ON646298.1| 2949625 g6643 i0 95.588 14.5276752767528 272 11 100 1 1 271 310 39 Endolimax carassius isolate BCN_1 small subunit ribosomal RNA gene, partial sequence blastn 3937 435 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax carassius
21443173 21443173 PRJNA1180292_P_NODE_13237_length_234_cov_2.043478_g13105_i0 PRJNA1180292 13237 234 2.043478 4.78173852 Entamoeba 5758 Evosea other_Eukaryota 171 5.55e-38   NTclustered gi|511087056|dbj|AK420796.1| 5759 g13105 i0 85.366 32.1025641025641 164 24 70 0 71 234 29 192 Entamoeba histolytica cDNA clone: Xeh-010G06, actin, complete cds, strain: HM-1:IMSS blastn 7512 171 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
21994533 21994533 PRJNA1180292_P_NODE_3118_length_388_cov_1.139683_g2986_i0 PRJNA1180292 3118 388 1.139683 4.42197004 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 7.97e-4   NTclustered gi|66818572|ref|XM_637854.1| 352472 g2986 i0 100 0.399484536082474 31 0 8 0 358 388 1478 1448 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0276855) mRNA, complete cds blastn 155 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;