RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1180292" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1180292 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6695783 6695783 PRJNA1180292_P_NODE_7406_length_259_cov_3.516129_g7274_i0 PRJNA1180292 7406 259 3.516129 9.10677411 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 409 1.22e-109   NTclustered gi|146762526|gb|EF553458.1| 2850 g7274 i0 95.038 98.9227799227799 262 10 100 3 1 259 4328 4067 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25621 409 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13794618 13794618 PRJNA1180292_P_NODE_931_length_725_cov_4.070552_g804_i0 PRJNA1180292 931 725 4.070552 29.511502 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 1254 0   NTclustered gi|2444483125|gb|OP718169.1| 97227 g804 i0 97.931 198.085517241379 725 13 100 2 1 725 72944 72222 Gomphonema parvulum chloroplast, complete genome blastn 143612 1260 0.995238095238095 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Gomphonemataceae Gomphonema Gomphonema parvulum
16894966 16894966 PRJNA1180292_P_NODE_2274_length_451_cov_3.695767_g2142_i0 PRJNA1180292 2274 451 3.695767 16.66790917 Psammothidium abundans 1912075 SAR_Eukaryotes SAR_Eukaryotes 717 0   NTclustered gi|1090888722|gb|KU565395.1| 1912075 g2142 i0 96.339 93.7627494456763 437 15 97 1 1 436 26 462 Psammothidium abundans voucher MIC5_40b 28S ribosomal RNA gene, partial sequence blastn 42287 717 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cocconeidales Achnanthidiaceae Psammothidium Psammothidium abundans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;