RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1175041" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1175041 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1041123 1041123 PRJNA1175041_P_NODE_66661_length_342_cov_1.182156_g63793_i0 PRJNA1175041 66661 342 1.182156 4.04297352 Mesomycoplasma 2923352 Bacteria Bacteria 625 1.5199999999999998e-174   NTclustered gi|2713084492|gb|CP150431.1| 2100 g63793 i0 99.707 16.3099415204678 341 1 99 0 2 342 671212 670872 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 5578 625 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
4869162 4869162 PRJNA1175041_P_NODE_107384_length_239_cov_1.783133_g104516_i0 PRJNA1175041 107384 239 1.783133 4.26168787 Mesomycoplasma 2923352 Bacteria Bacteria 431 2.3599999999999996e-116   NTclustered gi|1720621726|gb|CP035041.1| 2100 g104516 i0 99.167 15.0627615062761 240 1 100 1 1 239 423457 423696 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 3600 431 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
9969225 9969225 PRJNA1175041_P_NODE_54328_length_409_cov_1.523810_g51460_i0 PRJNA1175041 54328 409 1.52381 6.2323829 Mollicutes 31969 Bacteria Bacteria 750 0   NTclustered gi|281186773|gb|GU227378.1| 2100 g51460 i0 99.756 100.987775061125 409 1 100 0 1 409 1346 938 Mycoplasma hyorhinis strain USP36P 16S ribosomal RNA gene, partial sequence blastn 41304 750 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;