RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1175041" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1175041 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1592176 1592176 PRJNA1175041_P_NODE_92302_length_259_cov_2.424731_g89434_i0 PRJNA1175041 92302 259 2.424731 6.28005329 Fusarium graminearum 5518 Fungi Fungi 473 4.25e-129   NTclustered gi|758213408|ref|XR_893050.1| 229533 g89434 i0 99.615 100.359073359073 260 0 100 1 1 259 2143 2402 Fusarium graminearum PH-1 28S ribosomal RNA (FGSG_20057), rRNA blastn 25993 473 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium graminearum
3591570 3591570 PRJNA1175041_P_NODE_64163_length_353_cov_1.889286_g61295_i0 PRJNA1175041 64163 353 1.889286 6.66917958 Fungi 4751 Fungi Fungi 652 0   NTclustered gi|1802474924|gb|MN995479.1| 5507 g61295 i0 100 100 353 0 100 0 1 353 911 559 Fusarium oxysporum isolate 4J small subunit ribosomal RNA gene, partial sequence blastn 35300 652 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium oxysporum
8694026 8694026 PRJNA1175041_P_NODE_108747_length_230_cov_4.605096_g105879_i0 PRJNA1175041 108747 230 4.605096 10.5917208 Fungi 4751 Fungi Fungi 425 1.05e-114   NTclustered gi|1393056924|gb|MH393343.1| 5507 g105879 i0 100 100 230 0 100 0 1 230 795 1024 Fusarium oxysporum strain NFTd5 large subunit ribosomal RNA gene, partial sequence blastn 23000 425 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium oxysporum
15068820 15068820 PRJNA1175041_P_NODE_72432_length_319_cov_1.975610_g69564_i0 PRJNA1175041 72432 319 1.97561 6.3021959 Ascomycota 4890 Fungi Fungi 584 2.38e-162   NTclustered gi|1511677799|gb|MK156385.1| 5507 g69564 i0 99.687 100 319 1 100 0 1 319 63 381 Fusarium oxysporum isolate DOBFusoxy small subunit ribosomal RNA gene, partial sequence blastn 31900 584 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium oxysporum
20167441 20167441 PRJNA1175041_P_NODE_71736_length_322_cov_1.184739_g68868_i0 PRJNA1175041 71736 322 1.184739 3.81485958 Fusarium 5506 Fungi Fungi 564 3.139999999999999e-156   NTclustered gi|1206256888|emb|LT841236.1| 42551 g68868 i0 98.438 101.385093167702 320 5 99 0 1 320 5502 5183 Fusarium oxysporum f. sp. dianthi partial 18S rRNA gene for 18S ribosomal RNA, strain Fod008 blastn 32646 564 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium oxysporum
21443028 21443028 PRJNA1175041_P_NODE_33997_length_633_cov_3.058929_g31180_i0 PRJNA1175041 33997 633 3.058929 19.36302057 Fusarium 5506 Fungi Fungi 1170 0   NTclustered gi|459354702|gb|KC311482.1| 5516 g31180 i0 100 97.739336492891 633 0 100 0 1 633 1146 514 Fusarium culmorum isolate E13b 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61869 1170 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Nectriaceae Fusarium Fusarium culmorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;