RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1174770" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174770 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
316385 316385 PRJNA1174770_P_NODE_9501_length_166_cov_0.888889_g9412_i0 PRJNA1174770 9501 166 0.888889 1.47555574 Urbifossiella limnaea 2528023 Bacteria Bacteria 126 8.08e-25   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g9412 i0 89.899 0.596385542168675 99 8 59 2 1 98 3935256 3935159 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 99 126 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
11794839 11794839 PRJNA1174770_P_NODE_10350_length_165_cov_0.879310_g10261_i0 PRJNA1174770 10350 165 0.87931 1.4508615 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 187 3.6199999999999985e-43   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g10261 i0 89.333 23.8363636363636 150 15 90 1 1 149 7050734 7050585 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 3933 187 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
15619043 15619043 PRJNA1174770_P_NODE_5393_length_200_cov_1.033113_g5304_i0 PRJNA1174770 5393 200 1.033113 2.066226 Gimesia panareensis 2527978 Bacteria Bacteria 228 2.689999999999999e-55   NTclustered gi|1712615819|gb|CP036277.1| 2527978 g5304 i0 87.255 110.205 204 20 100 6 1 200 2210569 2210770 Gimesia panareensis strain Pan110 chromosome, complete genome blastn 22041 228 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia panareensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;