RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1174770" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 5 ✖

bioproject 1

  • PRJNA1174770 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3591493 3591493 PRJNA1174770_P_NODE_8283_length_168_cov_0.873950_g8194_i0 PRJNA1174770 8283 168 0.87395 1.468236 Fusobacterium 848 Bacteria Bacteria 222 1.02e-53   NTclustered gi|2444100754|gb|CP117525.1| 851 g8194 i0 100 97.1964285714286 120 0 100 0 49 168 541539 541658 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 16329 222 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
18892484 18892484 PRJNA1174770_P_NODE_10015_length_165_cov_0.896552_g9926_i0 PRJNA1174770 10015 165 0.896552 1.4793108 Fusobacterium 848 Bacteria Bacteria 305 9.59e-79   NTclustered gi|2444100754|gb|CP117525.1| 851 g9926 i0 100 100 165 0 100 0 1 165 711606 711442 Fusobacterium nucleatum strain FNV chromosome, complete genome blastn 16500 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
20167303 20167303 PRJNA1174770_P_NODE_12076_length_162_cov_0.920354_g11987_i0 PRJNA1174770 12076 162 0.920354 1.49097348 Fusobacterium 848 Bacteria Bacteria 300 4.36e-77   NTclustered gi|2446175567|gb|CP117964.1| 851 g11987 i0 100 76.1728395061728 162 0 100 0 1 162 650671 650510 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 12340 300 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
20717627 20717627 PRJNA1174770_P_NODE_11917_length_162_cov_0.920354_g11828_i0 PRJNA1174770 11917 162 0.920354 1.49097348 Leptotrichia wadei 157687 Bacteria Bacteria 294 2.03e-75   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g11828 i0 99.383 15.8271604938272 162 1 100 0 1 162 203702 203863 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 2564 294 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
23268517 23268517 PRJNA1174770_P_NODE_8739_length_167_cov_0.881356_g8650_i0 PRJNA1174770 8739 167 0.881356 1.47186452 Fusobacterium polymorphum 76857 Bacteria Bacteria 292 7.58e-75   NTclustered gi|958164477|gb|CP013328.1| 76857 g8650 i0 98.204 495.449101796407 167 3 100 0 1 167 2359514 2359348 Fusobacterium nucleatum subsp. polymorphum strain ChDC F319 genome blastn 82740 292 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;