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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 6 ✖

bioproject 1

  • PRJNA1174234 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7969438 7969438 PRJNA1174234_P_NODE_3407_length_714_cov_2.148206_g3228_i0 PRJNA1174234 3407 714 2.148206 15.33819084 Thermoplasmata archaeon 1906666 Archaea Archaea 62.1 1.19e-4   NTclustered gi|2108430933|gb|CP070629.1| 1906666 g3228 i0 97.222 4.54901960784314 36 1 5 0 81 116 816497 816462 MAG: Thermoplasmata archaeon isolate bin983 chromosome blastn 3248 62.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
10519809 10519809 PRJNA1174234_P_NODE_35829_length_241_cov_0.916667_g35633_i0 PRJNA1174234 35829 241 0.916667 2.20916747 uncultured crenarchaeote 29281 Archaea Archaea 195 3.41e-45   NTclustered gi|82618470|gb|DQ278118.1| 29281 g35633 i0 98.198 3.48132780082988 111 2 46 0 1 111 1383 1493 Uncultured crenarchaeote clone OdenA-100ii 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence blastn 839 195 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
15618839 15618839 PRJNA1174234_P_NODE_20993_length_301_cov_1.776316_g20797_i0 PRJNA1174234 20993 301 1.776316 5.34671116 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 540 4.899999999999999e-149   NTclustered gi|937513727|gb|CP012850.1| 1353260 g20797 i0 99.003 7.86046511627907 301 3 100 0 1 301 3035484 3035784 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 2366 540 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
21992804 21992804 PRJNA1174234_P_NODE_38_length_2982_cov_15.037126_g34_i0 PRJNA1174234 38 2982 15.037126 448.40709732 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 5443 0   NTclustered gi|937513727|gb|CP012850.1| 1353260 g34 i0 99.631 94.3675385647217 2982 7 99 2 1 2978 850678 847697 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 281404 5443 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
22717833 22717833 PRJNA1174234_P_NODE_1938_length_890_cov_22.564259_g1790_i0 PRJNA1174234 1938 890 22.564259 200.8219051 root 1 Root_unresolved Root_unresolved 1644 0   NTclustered gi|66766039|emb|AJ831163.1| 13776 g1790 i0 100 102.605617977528 890 0 100 0 1 890 144 1033 Unidentified archaeon 16S rRNA gene, clone 235 blastn 91319 1644 1 Archaea               unidentified archaeon
25267222 25267222 PRJNA1174234_P_NODE_5940_length_557_cov_15.590909_g5744_i0 PRJNA1174234 5940 557 15.590909 86.84136313 Thermoproteati 1783275 Archaea Archaea 1027 0   NTclustered gi|82618470|gb|DQ278118.1| 29281 g5744 i0 100 98.1723518850987 556 0 99 0 1 556 817 1372 Uncultured crenarchaeote clone OdenA-100ii 16S ribosomal RNA gene, partial sequence; and 16S-23S ribosomal RNA intergenic spacer, complete sequence blastn 54682 1027 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;