RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7418769 7418769 PRJNA1174234_P_NODE_11706_length_403_cov_1.154545_g11510_i0 PRJNA1174234 11706 403 1.154545 4.65281635 Verrucomicrobiaceae 203557 Bacteria Bacteria 372 2.61e-98   NTclustered gi|183579826|emb|AM905423.1| 48465 g11510 i0 89.796 232.90570719603 294 25 73 4 1 294 1772 1484 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 93861 374 0.994652406417112 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
11794652 11794652 PRJNA1174234_P_NODE_13810_length_370_cov_2.003367_g13614_i0 PRJNA1174234 13810 370 2.003367 7.4124579 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 364 3.98e-96   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g13614 i0 84.553 265.651351351351 369 55 99 2 1 369 1023 1389 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 98291 364 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
20717486 20717486 PRJNA1174234_P_NODE_25277_length_273_cov_1.415000_g25081_i0 PRJNA1174234 25277 273 1.415 3.86295 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 494 3.46e-135   NTclustered gi|2874254020|emb|OY970345.1| 412056 g25081 i0 99.267 277.021978021978 273 2 100 0 1 273 3893531 3893803 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 blastn 75627 494 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;