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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1174234 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
316173 316173 PRJNA1174234_P_NODE_21961_length_294_cov_2.796380_g21765_i0 PRJNA1174234 21961 294 2.79638 8.2213572 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 169 2.6000000000000002e-37   NTclustered gi|695420111|ref|XM_009529545.1| 67593 g21765 i0 82.979 9.02721088435374 188 30 64 2 70 256 199 13 Phytophthora sojae hypothetical protein mRNA blastn 2654 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
316181 316181 PRJNA1174234_P_NODE_24201_length_280_cov_1.111111_g24005_i0 PRJNA1174234 24201 280 1.111111 3.1111108 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 169 2.46e-37   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g24005 i0 78.467 3.23928571428571 274 47 96 10 5 272 105 372 Saprolegnia diclina VS20 caltractin mRNA blastn 907 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
1040948 1040948 PRJNA1174234_P_NODE_32941_length_245_cov_0.895349_g32745_i0 PRJNA1174234 32941 245 0.895349 2.19360505 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 200 7.46e-47   NTclustered gi|2795047467|ref|XM_067937988.1| 4785 g32745 i0 84.058 51.9020408163265 207 33 84 0 25 231 297 91 Phytophthora cinnamomi UPF0468 protein (IUM83_13323), partial mRNA blastn 12716 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
5419215 5419215 PRJNA1174234_P_NODE_30005_length_250_cov_0.870056_g29809_i0 PRJNA1174234 30005 250 0.870056 2.17514 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 207 4.57e-49   NTclustered gi|669150423|ref|XM_008612552.1| 1156394 g29809 i0 81.673 15.82 251 44 100 2 1 250 558 807 Saprolegnia diclina VS20 ubiquitin-conjugating enzyme E2 4 mRNA blastn 3955 207 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
6694009 6694009 PRJNA1174234_P_NODE_18286_length_322_cov_1.530120_g18090_i0 PRJNA1174234 18286 322 1.53012 4.9269864 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 318 2.7e-82   NTclustered gi|695434207|ref|XM_009533074.1| 67593 g18090 i0 88.104 42.4409937888199 269 30 83 2 18 285 327 60 Phytophthora sojae hypothetical protein partial mRNA blastn 13666 318 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
6694011 6694011 PRJNA1174234_P_NODE_18606_length_320_cov_1.141700_g18410_i0 PRJNA1174234 18606 320 1.1417 3.65344 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.92e-15   NTclustered gi|166043104|emb|CU357750.1| 100861 g18410 i0 74.786 29.98125 234 47 70 8 1 225 177 407 Aphanomyces euteiches cDNA blastn 9594 95.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6694020 6694020 PRJNA1174234_P_NODE_19486_length_312_cov_2.464435_g19290_i0 PRJNA1174234 19486 312 2.464435 7.6890372 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 91.6 6.18e-14   NTclustered gi|813149133|ref|XM_012344824.1| 695850 g19290 i0 87.342 0.253205128205128 79 10 25 0 47 125 1165 1087 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 79 91.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
13069683 13069683 PRJNA1174234_P_NODE_20891_length_302_cov_1.344978_g20695_i0 PRJNA1174234 20891 302 1.344978 4.06183356 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 248 3.34e-61   NTclustered gi|813219605|ref|XM_012355790.1| 695850 g20695 i0 84.462 61.7086092715232 251 39 83 0 13 263 1267 1517 Saprolegnia parasitica CBS 223.65 methylmalonate-semialdehyde dehydrogenase mRNA blastn 18636 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
15618814 15618814 PRJNA1174234_P_NODE_17833_length_326_cov_1.505929_g17637_i0 PRJNA1174234 17833 326 1.505929 4.90932854 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 592 1.4599999999999996e-164   NTclustered gi|325194231|emb|FR825088.1| 890382 g17637 i0 99.387 14.2883435582822 326 2 100 0 1 326 1227 1552 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 4658 592 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15618869 15618869 PRJNA1174234_P_NODE_25333_length_273_cov_1.155000_g25137_i0 PRJNA1174234 25333 273 1.155 3.15315 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 346 1.03e-90   NTclustered gi|2795052452|ref|XM_067926699.1| 4785 g25137 i0 91.6 83.4029304029304 250 21 92 0 24 273 519 270 Phytophthora cinnamomi caltractin (IUM83_02754), partial mRNA blastn 22769 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
15618969 15618969 PRJNA1174234_P_NODE_6853_length_522_cov_0.942094_g6657_i0 PRJNA1174234 6853 522 0.942094 4.91773068 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 189 3.74e-43   NTclustered gi|2794905809|ref|XM_067889902.1| 164328 g6657 i0 79.554 15.860153256705 269 51 51 4 56 323 24 289 Phytophthora ramorum 13 kDa ribonucleoprotein-associated protein (KRP23_4892), partial mRNA blastn 8279 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15618981 15618981 PRJNA1174234_P_NODE_8293_length_478_cov_1.429630_g8097_i0 PRJNA1174234 8293 478 1.42963 6.8336314 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 75 9.93e-9   NTclustered gi|673020635|ref|XM_008866057.1| 157072 g8097 i0 79.63 0.648535564853556 108 18 22 4 1 106 1196 1091 Aphanomyces invadans dihydrolipoyl dehydrogenase mRNA blastn 310 75 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
16893289 16893289 PRJNA1174234_P_NODE_6014_length_555_cov_1.068465_g5818_i0 PRJNA1174234 6014 555 1.068465 5.92998075 Pseudoperonospora cubensis 143453 SAR_Eukaryotes SAR_Eukaryotes 350 1.73e-91   NTclustered gi|927372602|ref|NC_027859.1| 143453 g5818 i0 79.879 89.1675675675676 497 84 87 9 46 528 23332 23826 Pseudoperonospora cubensis mitochondrion, complete genome blastn 49488 350 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Pseudoperonospora Pseudoperonospora cubensis
21992653 21992653 PRJNA1174234_P_NODE_12878_length_383_cov_8.454839_g12682_i0 PRJNA1174234 12878 383 8.454839 32.38203337 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 702 0   NTclustered gi|325195057|emb|FR825852.1| 890382 g12682 i0 99.739 97.710182767624 383 1 100 0 1 383 505 123 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 37423 702 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
22717840 22717840 PRJNA1174234_P_NODE_24158_length_280_cov_1.376812_g23962_i0 PRJNA1174234 24158 280 1.376812 3.8550736 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.98e-8   NTclustered gi|325183295|emb|FR824085.1| 890382 g23962 i0 92.157 0.939285714285714 51 4 21 0 140 190 34757 34707 Albugo laibachii Nc14, genomic contig CONTIG_40_NC14_v4_133649_231 blastn 263 73.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25267195 25267195 PRJNA1174234_P_NODE_15060_length_355_cov_1.556738_g14864_i0 PRJNA1174234 15060 355 1.556738 5.5264199 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 58.4 7.22e-4   NTclustered gi|2794880233|ref|XM_067890569.1| 164328 g14864 i0 97.143 3.71549295774648 35 0 10 1 41 74 211 177 Phytophthora ramorum Translation machinery-associated protein 22 (KRP23_570), partial mRNA blastn 1319 58.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;