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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174234 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5419147 5419147 PRJNA1174234_P_NODE_17045_length_334_cov_1.386973_g16849_i0 PRJNA1174234 17045 334 1.386973 4.63248982 Strongyloides papillosus 174720 Nematoda Nematoda 220 8.16e-53   NTclustered gi|690020567|emb|LM528097.1| 174720 g16849 i0 79.193 20.0658682634731 322 63 96 4 2 321 110 429 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0002428 blastn 6702 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
6693987 6693987 PRJNA1174234_P_NODE_15206_length_354_cov_1.056940_g15010_i0 PRJNA1174234 15206 354 1.05694 3.7415676 Caenorhabditis remanei 31234 Nematoda Nematoda 176 1.9e-39   NTclustered gi|2445378119|ref|XM_003100380.2| 31234 g15010 i0 85.294 31.8022598870057 170 25 48 0 95 264 194 25 Caenorhabditis remanei uncharacterized protein (GCK72_016568), partial mRNA blastn 11258 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10519797 10519797 PRJNA1174234_P_NODE_3409_length_714_cov_1.862715_g3230_i0 PRJNA1174234 3409 714 1.862715 13.2997851 Strongyloides ratti 34506 Nematoda Nematoda 484 5.94e-132   NTclustered gi|1376145717|ref|XM_024653392.1| 34506 g3230 i0 80.538 20.1680672268908 632 121 88 2 82 712 1291 661 Strongyloides ratti 26S proteasome regulatory complex subunit p50 (SRAE_2000233400), partial mRNA blastn 14400 484 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12519612 12519612 PRJNA1174234_P_NODE_27630_length_259_cov_1.241935_g27434_i0 PRJNA1174234 27630 259 1.241935 3.21661165 Opisthokonta 33154 Nematoda Nematoda 207 4.76e-49   NTclustered gi|687022644|emb|LM525558.1| 174720 g27434 i0 82.833 54.0926640926641 233 38 90 2 28 259 232766 232535 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 14010 209 0.990430622009569 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
13069639 13069639 PRJNA1174234_P_NODE_1371_length_1020_cov_2.142555_g1246_i0 PRJNA1174234 1371 1020 2.142555 21.854061 Strongyloides ratti 34506 Nematoda Nematoda 497 1.11e-135   NTclustered gi|1376154049|ref|XM_024646386.1| 34506 g1246 i0 80.271 18.0166666666667 664 127 65 4 351 1012 1442 781 Strongyloides ratti V-type proton ATPase subunit B, kidney (SRAE_X000121000), partial mRNA blastn 18377 497 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
18167650 18167650 PRJNA1174234_P_NODE_11655_length_404_cov_1.145015_g11459_i0 PRJNA1174234 11655 404 1.145015 4.6258606 Strongyloides ratti 34506 Nematoda Nematoda 316 1.24e-81   NTclustered gi|1376156977|ref|XM_024645910.1| 34506 g11459 i0 81.378 39.3787128712871 392 69 97 4 8 397 1146 757 Strongyloides ratti RE01104p (SRAE_0000006900), partial mRNA blastn 15909 316 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
21442876 21442876 PRJNA1174234_P_NODE_23757_length_283_cov_0.852381_g23561_i0 PRJNA1174234 23757 283 0.85238100000000006 2.41223823 Opisthokonta 33154 Nematoda Nematoda 54.7 0.007   NTclustered gi|2082294080|ref|XM_043074478.1| 6279 g23561 i0 100 1.85512367491166 29 0 10 0 95 123 57 29 Brugia malayi Uncharacterized protein (Bma-igcm-3), partial mRNA blastn 525 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
21992700 21992700 PRJNA1174234_P_NODE_19138_length_315_cov_3.842975_g18942_i0 PRJNA1174234 19138 315 3.842975 12.10537125 Diplogastrellus sp. VS-2014 1538693 Nematoda Nematoda 163 1.31e-35   NTclustered gi|675119125|gb|KJ877442.1| 1538693 g18942 i0 82.703 46.0952380952381 185 30 58 2 97 280 64 247 Diplogastrellus sp. VS-2014 strain RS5608 small subunit ribosomal protein 27 (rps-27) mRNA, partial cds blastn 14520 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus sp. VS-2014
24542059 24542059 PRJNA1174234_P_NODE_18860_length_318_cov_0.942857_g18664_i0 PRJNA1174234 18860 318 0.942857 2.99828526 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.03   NTclustered gi|687022641|emb|LM525555.1| 174720 g18664 i0 100 0.0880503144654088 28 0 9 0 14 41 158651 158678 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
24542174 24542174 PRJNA1174234_P_NODE_5360_length_584_cov_2.217221_g5165_i0 PRJNA1174234 5360 584 2.217221 12.94857064 Strongyloides ratti 34506 Nematoda Nematoda 433 1.7599999999999995e-116   NTclustered gi|1376142265|ref|XM_024651434.1| 34506 g5165 i0 80.526 80.9965753424657 570 105 97 6 16 582 1155 589 Strongyloides ratti Elongation factor 1-alpha (SRAE_2000058600), partial mRNA blastn 47302 433 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;