RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1174234 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
316225 316225 PRJNA1174234_P_NODE_34081_length_243_cov_0.905882_g33885_i0 PRJNA1174234 34081 243 0.905882 2.20129326 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 180 9.63e-41   NTclustered gi|2031943822|emb|OD958321.1| 5763 g33885 i0 80.247 3 243 45 99 3 2 243 7317 7077 Naegleria fowleri Karachi_NF001 strain blastn 729 180 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
1590713 1590713 PRJNA1174234_P_NODE_14222_length_365_cov_1.250000_g14026_i0 PRJNA1174234 14222 365 1.25 4.5625 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 278 5.2500000000000006e-70   NTclustered gi|2124405484|ref|XM_044686830.1| 51637 g14026 i0 81.287 22.8575342465753 342 64 94 0 14 355 555 896 Naegleria lovaniensis uncharacterized protein (C9374_011200), partial mRNA blastn 8343 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
13069753 13069753 PRJNA1174234_P_NODE_30931_length_248_cov_0.880000_g30735_i0 PRJNA1174234 30931 248 0.88 2.1824 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 161 3.5699999999999995e-35   NTclustered gi|2124391292|ref|XM_044710539.1| 5763 g30735 i0 78.906 64.5685483870968 256 40 99 11 2 247 264 13 Naegleria fowleri uncharacterized protein (FDP41_006859), partial mRNA blastn 16013 161 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15618905 15618905 PRJNA1174234_P_NODE_30513_length_249_cov_0.875000_g30317_i0 PRJNA1174234 30513 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 52.8 0.023   NTclustered gi|290997388|ref|XM_002681218.1| 5762 g30317 i0 96.774 0.124497991967871 31 1 12 0 95 125 2129 2099 Naegleria gruberi protein kinase (NAEGRDRAFT_78541), partial mRNA blastn 31 52.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19442140 19442140 PRJNA1174234_P_NODE_2556_length_802_cov_5.378601_g2390_i0 PRJNA1174234 2556 802 5.378601 43.13638002 Acrasis rosea 43695 Heterolobosea other_Eukaryota 689 0   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g2390 i0 84.203 61.2930174563591 709 112 88 0 94 802 1204 496 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 49157 689 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;