RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1174234 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590797 1590797 PRJNA1174234_P_NODE_30362_length_249_cov_0.875000_g30166_i0 PRJNA1174234 30362 249 0.875 2.17875 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 235 2.08e-57   NTclustered gi|470430883|ref|XM_004338296.1| 1257118 g30166 i0 85.043 8.36947791164659 234 31 93 3 3 234 262 31 Acanthamoeba castellanii str. Neff 60S ribosomal protein L23, putative (ACA1_203760), partial mRNA blastn 2084 235 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5419286 5419286 PRJNA1174234_P_NODE_8465_length_473_cov_1.910000_g8269_i0 PRJNA1174234 8465 473 1.91 9.0343 Paramoeba branchiphila 308475 Discosea other_Eukaryota 296 1.93e-75   NTclustered gi|226347442|gb|FJ807261.1| 308475 g8269 i0 78.205 69.5813953488372 468 96 98 6 3 467 491 955 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 32912 296 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
9244021 9244021 PRJNA1174234_P_NODE_19368_length_313_cov_5.100000_g19172_i0 PRJNA1174234 19368 313 5.1 15.963 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 178 4.63e-40   NTclustered gi|470441658|ref|XM_004339391.1| 1257118 g19172 i0 79.468 31.258785942492 263 45 83 7 54 313 59 315 Acanthamoeba castellanii str. Neff ribosomal L5P family Cterminus, putative (ACA1_061660), partial mRNA blastn 9784 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;