RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174234 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
316117 316117 PRJNA1174234_P_NODE_13021_length_381_cov_3.250000_g12825_i0 PRJNA1174234 13021 381 3.25 12.3825 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 483 1.09e-131   NTclustered gi|76574288|gb|DQ139436.1| 171953 g12825 i0 91.061 93.2834645669291 358 30 94 2 25 381 372 16 Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence blastn 35541 483 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
4143129 4143129 PRJNA1174234_P_NODE_7924_length_488_cov_1.660241_g7728_i0 PRJNA1174234 7924 488 1.660241 8.10197608 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 73.1 3.65e-8   NTclustered gi|2874254091|emb|OY970174.1| 171953 g7728 i0 84.416 0.305327868852459 77 8 15 2 246 320 2496911 2496985 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 149 73.1 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7969300 7969300 PRJNA1174234_P_NODE_10567_length_424_cov_1.509972_g10371_i0 PRJNA1174234 10567 424 1.509972 6.40228128 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 187 1.07e-42   NTclustered gi|2893358426|emb|OZ220718.1| 2910147 g10371 i0 80.077 1.76415094339623 261 44 61 8 1 257 1182568 1182312 MAG: Vicinamibacterales bacterium isolate 0ce2d42f-2bf0-44bc-a671-070680eb922c genome assembly, chromosome: 1 blastn 748 187 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
11794657 11794657 PRJNA1174234_P_NODE_15030_length_355_cov_2.641844_g14834_i0 PRJNA1174234 15030 355 2.641844 9.3785462 Edaphobacter paludis 3035702 Bacteria Bacteria 73.1 2.58e-8   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g14834 i0 95.556 10.2422535211268 45 2 13 0 311 355 2761378 2761422 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 3636 73.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis
23268354 23268354 PRJNA1174234_P_NODE_31519_length_247_cov_0.885057_g31323_i0 PRJNA1174234 31519 247 0.885057 2.18609079 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 294 3.36e-75   NTclustered gi|2874253677|emb|OY969111.1| 171953 g31323 i0 88.211 1.97570850202429 246 29 99 0 2 247 1014396 1014641 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 488 294 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;