RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1174234 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866954 2866954 PRJNA1174234_P_NODE_22923_length_288_cov_1.195349_g22727_i0 PRJNA1174234 22923 288 1.195349 3.44260512 Trueperaceae bacterium 2026798 Bacteria Bacteria 381 2.9899999999999995e-101   NTclustered gi|2108366028|gb|CP070651.1| 2026798 g22727 i0 90.69 376.715277777778 290 22 99 5 1 287 6529 6816 MAG: Trueperaceae bacterium isolate bin86 chromosome blastn 108494 381 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
9969025 9969025 PRJNA1174234_P_NODE_17608_length_329_cov_0.878906_g17412_i0 PRJNA1174234 17608 329 0.878906 2.89160074 Deinococcus 1298 Bacteria Bacteria 603 6.819999999999999e-168   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g17412 i0 99.696 198.145896656535 329 1 100 0 1 329 1454948 1454620 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 65190 603 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
11244236 11244236 PRJNA1174234_P_NODE_4289_length_646_cov_2.595113_g4100_i0 PRJNA1174234 4289 646 2.595113 16.76442998 Truepera 332248 Bacteria Bacteria 784 0   NTclustered gi|470486385|ref|NR_076754.1| 332249 g4100 i0 90.381 155.557275541796 603 48 92 8 1 597 1841 1243 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 100490 784 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
12519598 12519598 PRJNA1174234_P_NODE_15470_length_351_cov_1.158273_g15274_i0 PRJNA1174234 15470 351 1.158273 4.06553823 Truepera 332248 Bacteria Bacteria 549 9.649999999999996e-152   NTclustered gi|470486385|ref|NR_076754.1| 332249 g15274 i0 94.886 159.074074074074 352 17 100 1 1 351 1753 2104 Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence blastn 55835 549 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;