RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1174234" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 1 ✖

bioproject 1

  • PRJNA1174234 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7969438 7969438 PRJNA1174234_P_NODE_3407_length_714_cov_2.148206_g3228_i0 PRJNA1174234 3407 714 2.148206 15.33819084 Thermoplasmata archaeon 1906666 Archaea Archaea 62.1 1.19e-4   NTclustered gi|2108430933|gb|CP070629.1| 1906666 g3228 i0 97.222 4.54901960784314 36 1 5 0 81 116 816497 816462 MAG: Thermoplasmata archaeon isolate bin983 chromosome blastn 3248 62.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;