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contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA1174234" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 25 ✖

bioproject 1

  • PRJNA1174234 · 25 ✖

analysis 1

  • blastn · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590743 1590743 PRJNA1174234_P_NODE_19182_length_315_cov_1.272727_g18986_i0 PRJNA1174234 19182 315 1.272727 4.00909005 Volvox carteri 3067 Plants Plants 231 3.5299999999999996e-56   NTclustered gi|302832699|ref|XM_002947868.1| 3068 g18986 i0 84.1 18.184126984127 239 38 76 0 27 265 402 164 Volvox carteri f. nagariensis elongation factor 2 (EF-2, EF-TU) (efg2), mRNA blastn 5728 231 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
1590752 1590752 PRJNA1174234_P_NODE_21022_length_301_cov_1.350877_g20826_i0 PRJNA1174234 21022 301 1.350877 4.06613977 Diplosphaera sp. (in: green algae) 2911680 Plants Plants 335 2.48e-87   NTclustered gi|2644500050|gb|PP079688.1| 2911680 g20826 i0 98.93 74.046511627907 187 2 62 0 115 301 1973 1787 Diplosphaera sp. (in: green algae) isolate C3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22288 335 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sp. (in: green algae)
2866964 2866964 PRJNA1174234_P_NODE_25303_length_273_cov_1.155000_g25107_i0 PRJNA1174234 25303 273 1.155 3.15315 Massjukichlorella minus 2650457 Plants Plants 294 3.77e-75   NTclustered gi|2473928430|ref|NC_072902.1| 2650457 g25107 i0 89.03 92.4505494505494 237 26 87 0 1 237 186771 187007 Massjukichlorella minus clone BN2720 chloroplast, complete genome blastn 25239 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Massjukichlorella Massjukichlorella minus
4143003 4143003 PRJNA1174234_P_NODE_18044_length_324_cov_1.693227_g17848_i0 PRJNA1174234 18044 324 1.693227 5.48605548 Golenkinia longispicula 204992 Plants Plants 370 7.4e-98   NTclustered gi|952953743|gb|KT625111.1| 204992 g17848 i0 92.015 109.37962962963 263 21 81 0 46 308 3934 3672 Golenkinia longispicula clone contig295 chloroplast, partial genome blastn 35439 370 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Golenkiniaceae Golenkinia Golenkinia longispicula
4869008 4869008 PRJNA1174234_P_NODE_34624_length_242_cov_3.011834_g34428_i0 PRJNA1174234 34624 242 3.011834 7.28863828 Trebouxiophyceae 75966 Plants Plants 444 3.08e-120   NTclustered gi|344221875|gb|HQ702325.1| 3077 g34428 i0 100 98.4173553719008 240 0 99 0 1 240 16 255 Chlorella vulgaris strain KMMCC FC-41 18S ribosomal RNA gene, partial sequence blastn 23817 444 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
6694037 6694037 PRJNA1174234_P_NODE_21986_length_294_cov_1.742081_g21790_i0 PRJNA1174234 21986 294 1.742081 5.12171814 Chlamydomonas reinhardtii 3055 Plants Plants 171 7.22e-38   NTclustered gi|2082238142|ref|XM_043059158.1| 3055 g21790 i0 81.429 5.58503401360544 210 37 71 2 84 292 1466 1258 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g076350v5), mRNA blastn 1642 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7969342 7969342 PRJNA1174234_P_NODE_16527_length_339_cov_14.496241_g16331_i0 PRJNA1174234 16527 339 14.496241 49.14225699 Chloroidium sp. KL-2023a 3031248 Plants Plants 555 1.9999999999999993e-153   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g16331 i0 96.165 117.227138643068 339 13 100 0 1 339 220253 219915 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 39740 555 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
8693912 8693912 PRJNA1174234_P_NODE_33607_length_244_cov_0.900585_g33411_i0 PRJNA1174234 33607 244 0.900585 2.1974274 Chlorophyta 3041 Plants Plants 159 1.2599999999999999e-34   NTclustered gi|2082256823|ref|XM_001690323.2| 3055 g33411 i0 83.529 10.1147540983607 170 28 70 0 70 239 697 528 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g439150v5), mRNA blastn 2468 159 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9244175 9244175 PRJNA1174234_P_NODE_9488_length_448_cov_0.925333_g9292_i0 PRJNA1174234 9488 448 0.925333 4.14549184 Chlamydomonas reinhardtii 3055 Plants Plants 296 1.82e-75   NTclustered gi|2082246492|ref|XM_043062586.1| 3055 g9292 i0 78.808 94.8883928571429 453 86 100 10 1 448 952 505 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g250200v5), mRNA blastn 42510 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9969069 9969069 PRJNA1174234_P_NODE_6108_length_550_cov_6.920335_g5912_i0 PRJNA1174234 6108 550 6.920335 38.0618425 Chlorophyta 3041 Plants Plants 1013 0   NTclustered gi|344221871|gb|HQ702321.1| 3077 g5912 i0 100 99.6581818181818 548 0 99 0 1 548 480 1027 Chlorella vulgaris strain KMMCC EC-5 18S ribosomal RNA gene, partial sequence blastn 54812 1013 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
10519737 10519737 PRJNA1174234_P_NODE_23929_length_281_cov_4.293269_g23733_i0 PRJNA1174234 23929 281 4.293269 12.06408589 uncultured Trebouxiophyceae 167235 Plants Plants 457 4.7e-124   NTclustered gi|1735341976|gb|MN419176.1| 167235 g23733 i0 96.39 95.6654804270463 277 10 99 0 1 277 316 592 Uncultured Trebouxiophyceae clone EukCL14 large subunit ribosomal RNA gene, partial sequence blastn 26882 457 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
11794671 11794671 PRJNA1174234_P_NODE_16950_length_335_cov_1.389313_g16754_i0 PRJNA1174234 16950 335 1.389313 4.65419855 Chloroidium sp. UTEX 3077 2686440 Plants Plants 337 7.789999999999998e-88   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g16754 i0 97.938 59.8865671641791 194 4 87 0 142 335 62500 62307 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 20062 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
11794715 11794715 PRJNA1174234_P_NODE_25370_length_273_cov_0.980000_g25174_i0 PRJNA1174234 25370 273 0.98 2.6754 Chloroidium sp. UTEX 3077 2686440 Plants Plants 399 7.769999999999998e-107   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g25174 i0 93.141 78.3150183150183 277 12 100 6 1 273 62988 62715 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 21380 399 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
13069731 13069731 PRJNA1174234_P_NODE_27231_length_261_cov_1.627660_g27035_i0 PRJNA1174234 27231 261 1.62766 4.2481926 Koliella corcontica 155904 Plants Plants 431 2.62e-116   NTclustered gi|723456950|ref|NC_025536.1| 155904 g27035 i0 97.619 103.674329501916 252 5 96 1 1 251 83015 83266 Koliella corcontica culture-collection SAG:24.84 chloroplast, complete genome blastn 27059 431 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella corcontica
14345081 14345081 PRJNA1174234_P_NODE_23132_length_286_cov_3.042254_g22936_i0 PRJNA1174234 23132 286 3.042254 8.70084644 Volvox carteri 3067 Plants Plants 54.7 0.007   NTclustered gi|349584|gb|L07946.1|VVCH1IA 3068 g22936 i0 100 0.202797202797203 29 0 10 0 165 193 1537 1509 Volvox carteri nagariensis histone (H1-I) gene, complete cds blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
18167646 18167646 PRJNA1174234_P_NODE_10795_length_420_cov_15.106628_g10599_i0 PRJNA1174234 10795 420 15.106628 63.4478376 Chloroidium ellipsoideum 63676 Plants Plants 374 7.6e-99   NTclustered gi|1169296931|gb|KY364701.1| 63676 g10599 i0 85.366 63.9619047619048 369 44 87 9 1 365 5385 5747 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 26864 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
18167854 18167854 PRJNA1174234_P_NODE_955_length_1166_cov_2.902104_g852_i0 PRJNA1174234 955 1166 2.902104 33.83853264 Chloroidium ellipsoideum 63676 Plants Plants 1478 0   NTclustered gi|154268761|gb|EU043048.1| 63676 g852 i0 98.337 105.598627787307 842 14 72 0 99 940 842 1 'Chlorella' ellipsoidea strain Ce photosystem II protein D1 (psbA) gene, partial cds; chloroplast blastn 123128 1478 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
19442158 19442158 PRJNA1174234_P_NODE_28876_length_251_cov_3.247191_g28680_i0 PRJNA1174234 28876 251 3.247191 8.15044941 Jaagichlorella roystonensis 1052852 Plants Plants 243 1.2600000000000001e-59   NTclustered gi|1819291170|ref|NC_046060.1| 1052852 g28680 i0 88.889 1.0996015936255 198 20 78 2 55 251 74007 73811 Jaagichlorella roystonensis mitochondrion, complete genome blastn 276 243 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella roystonensis
20717448 20717448 PRJNA1174234_P_NODE_1797_length_917_cov_17.924171_g1658_i0 PRJNA1174234 1797 917 17.924171 164.36464807 Chloroidium sp. KL-2023a 3031248 Plants Plants 1589 0   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g1658 i0 97.928 115.175572519084 917 19 100 0 1 917 220246 221162 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 105616 1589 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
21992712 21992712 PRJNA1174234_P_NODE_20978_length_301_cov_2.210526_g20782_i0 PRJNA1174234 20978 301 2.210526 6.65368326 Stichococcus bacillaris 37433 Plants Plants 446 1.0999999999999995e-120   NTclustered gi|371782093|emb|HE610125.1| 37433 g20782 i0 92.715 17.4750830564784 302 21 100 1 1 301 7291 6990 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 5260 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
21992836 21992836 PRJNA1174234_P_NODE_6818_length_523_cov_1.362222_g6622_i0 PRJNA1174234 6818 523 1.362222 7.12442106 Trebouxia asymmetrica 13787 Plants Plants 966 0   NTclustered gi|189909382|gb|EU725860.1| 13787 g6622 i0 100 115.449330783939 523 0 100 0 1 523 1194 1716 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 60380 966 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
23268278 23268278 PRJNA1174234_P_NODE_15559_length_350_cov_1.447653_g15363_i0 PRJNA1174234 15559 350 1.447653 5.0667855 Chloroidium sp. UTEX 3077 2686440 Plants Plants 324 6.35e-84   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g15363 i0 87.805 36.9657142857143 287 22 100 9 1 286 58295 58021 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 12938 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
23268305 23268305 PRJNA1174234_P_NODE_21079_length_301_cov_1.021930_g20883_i0 PRJNA1174234 21079 301 1.02193 3.0760093 Trebouxia lynnae 1825957 Plants Plants 534 2.28e-147   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g20883 i0 98.675 18.7641196013289 302 3 100 1 1 301 6952 6651 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 5648 534 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
23993126 23993126 PRJNA1174234_P_NODE_5039_length_600_cov_4.022770_g4844_i0 PRJNA1174234 5039 600 4.02277 24.13662 Coccomyxa 41891 Plants Plants 713 0   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g4844 i0 88.186 100.778333333333 601 67 100 4 1 600 4619 4022 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 60467 713 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
24542096 24542096 PRJNA1174234_P_NODE_260_length_1711_cov_17.741758_g226_i0 PRJNA1174234 260 1711 17.741758 303.56147938 Chloroidium sp. KL-2023a 3031248 Plants Plants 2998 0   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g226 i0 98.305 121.248392752776 1711 27 100 2 1 1711 221333 223041 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 207456 2998 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;